Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1773 ATGGGTTTCTACAACAATTTGGTCTCTTTTGCTGTTATTTTCTCTCTTTTACTTGCCCCTTGCCTTTCCTTTTATCCCAAACACTTCAATGTCTCTAAGTATCAATCCTCTGATTCCGATTGGTCTCCCGCTGTCGCTACTTGGTACGGCAGCGCTAATGGTGCTGGAAGTGATGGAGGTGCTTGTGGATATGGAAAGGCTGTGGAGGAACCACCGTTTTCGTCGTTAATCGCAGCCGGAGGCCCTTCGTTGTTCAAATCAGGGAAAGCATGTGGAGCTTGTTATGAGGTGAAGTGCTCGGAAAAAGCTGCATGCTCGGGTAATCCGGTGACGGTTGTGATAACGGACAGTTGTCCCGGCGGTTCGTGCGCTTCCGACGCCGTCCATTTTGACCTGAGTGGTACTGCTTTTGGAGCAATAGCAAAAAATGGTCAGGCTGATGCATTGCGCAATGTTGGTGTGTTGCAGATTCAATATAAAAGAGTTGAATGCAATTATCCAGGAAAGTCCATAAACTTCATTGTAGACAAAGGGTCAAATCCCAACTATTTTGCAGCTCTGATTGAATTTGAAGATGGAGATGGAGATCTTGCTTTAGTAGAGCTCAAACAAGCATCTGATTCCAACACATGGATTCCAATGCAACAATTATGGGGTGCAGTTTGGAAGCTCGACTACGGCTCCGCCCTCCAAGCTCCCTTCTCTCTCAGGCTCACCGCCCTCGACTCCGGCAAAACCGTCGTCGCTAGTAACGTTATACCGGCCGGATGGCAGGCCGGCCAAAATTACAGATCTGTTGTCAACTTTGATGTTTAA 816 47.43 MGFYNNLVSFAVIFSLLLAPCLSFYPKHFNVSKYQSSDSDWSPAVATWYGSANGAGSDGGACGYGKAVEEPPFSSLIAAGGPSLFKSGKACGACYEVKCSEKAACSGNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAIAKNGQADALRNVGVLQIQYKRVECNYPGKSINFIVDKGSNPNYFAALIEFEDGDGDLALVELKQASDSNTWIPMQQLWGAVWKLDYGSALQAPFSLRLTALDSGKTVVASNVIPAGWQAGQNYRSVVNFDV 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49316647 49318028 + evm.model.ptg000013l.1773 HCH7g1773 549058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1773 271 SMART dpbb_1 77 159 IPR007112 -
HCH7g1773 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 265 IPR007117 -
HCH7g1773 271 Pfam Lytic transglycolase 78 159 IPR009009 -
HCH7g1773 271 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1773 271 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1773 271 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1773 271 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1773 271 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1773 271 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1773 271 Pfam Expansin C-terminal domain 171 254 IPR007117 -
HCH7g1773 271 CDD DPBB_EXPB_N 41 164 - -
HCH7g1773 271 PANTHER EXPANSIN-B3 14 269 - -
HCH7g1773 271 SUPERFAMILY Barwin-like endoglucanases 35 168 IPR036908 -
HCH7g1773 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
HCH7g1773 271 Gene3D - 166 269 IPR036749 -
HCH7g1773 271 Gene3D - 27 165 IPR036908 -
HCH7g1773 271 SUPERFAMILY PHL pollen allergen 169 265 IPR036749 -
HCH7g1773 271 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
HCH7g1773 271 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
HCH7g1773 271 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
HCH7g1773 271 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
HCH7g1773 271 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576(InterPro)
HCH7g1773 271 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0425 HCH-Chr7:3085911 HCH7g1773 HCH-Chr7:49316647 1.50E-30 dispersed
HCH7g1773 HCH-Chr7:49316647 HCH7g1774 HCH-Chr7:49319079 5.20E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1773 - - - 0.0