Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1774 ATGATGAGTTTCTACAATTTGGTCTTCTTCGCTGTTATTTCATCTCTTTTACTTCGTCATTGCCTTTGCTTTTATCCCAAACACTTCAATGTCTCTAAATATGATCAATTCTTTTTTTCCGATTGGGCTCCGGCGGTTGCAACCTGGTACGGGAGCGCCCGCGGTGCCGGAAGTGATGGTGGTGCTTGTGGATACGGGGAAGCCGTGGAGGGTCCGCCATTTTCATCCTTCATCACAGCCGGAGGCCCTTCATTGTTTCAGTCAGGGAAAGCATGTGGAGCTTGTTATGAAGTGAAGTGCTCAGAAAGAGTAGCGTGTTCGAAGAATCCGGTGAGGGTGGTGATAACGGATAGCTGTCCCGGCGGTTCGTGTTCTTCCGACGCCGTCCACTTTGACCTGAGTGGCACTGCTTTTGGAGCAATGGCTAAAAATGGCCGGGCTGATGAACTGCGAAATGTTGGTGTCTTGCAGATTCAATATAAAAGAGTTGAATGCAATTATCCAGGAGTGTCCATAAACTTTGTTGTAGATAGAGGGTCAAATCCCTTCTTTTTTGCAGTTGTGATTGAATTTGAAGATGGAGATGGAGATCTTGCTTTAGTAGAGCTCAAACAGGCAAAGGATTCCTTCCCATGGATTCCAATGCAACAGTTATGGGGTGCTAATTGGAAGCTCAACTCCGGCTCCCCCCTCCAAGCTCCCTTCTCTCTCAGGCTCACCGCCCTCGACTCGGGTAAAACCGTTGTCACTTCTAACGTTATTCCCGCCAATTGGAAGCCCGGCCAAACTTACAGATCTGTTGTCAACTTTGATGTTTAA 819 47.5 MMSFYNLVFFAVISSLLLRHCLCFYPKHFNVSKYDQFFFSDWAPAVATWYGSARGAGSDGGACGYGEAVEGPPFSSFITAGGPSLFQSGKACGACYEVKCSERVACSKNPVRVVITDSCPGGSCSSDAVHFDLSGTAFGAMAKNGRADELRNVGVLQIQYKRVECNYPGVSINFVVDRGSNPFFFAVVIEFEDGDGDLALVELKQAKDSFPWIPMQQLWGANWKLNSGSPLQAPFSLRLTALDSGKTVVTSNVIPANWKPGQTYRSVVNFDV 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49319079 49325518 + evm.model.ptg000013l.1774 HCH7g1774 549059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1774 272 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1774 272 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1774 272 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1774 272 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1774 272 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1774 272 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH7g1774 272 SUPERFAMILY PHL pollen allergen 172 266 IPR036749 -
HCH7g1774 272 SMART dpbb_1 78 160 IPR007112 -
HCH7g1774 272 SUPERFAMILY Barwin-like endoglucanases 41 189 IPR036908 -
HCH7g1774 272 Gene3D - 167 270 IPR036749 -
HCH7g1774 272 Gene3D - 25 166 IPR036908 -
HCH7g1774 272 Pfam Lytic transglycolase 79 160 IPR009009 -
HCH7g1774 272 PANTHER EXPANSIN-B3 17 270 - -
HCH7g1774 272 CDD DPBB_EXPB_N 42 165 - -
HCH7g1774 272 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576(InterPro)
HCH7g1774 272 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
HCH7g1774 272 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576(InterPro)
HCH7g1774 272 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576(InterPro)
HCH7g1774 272 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576(InterPro)
HCH7g1774 272 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
HCH7g1774 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 266 IPR007117 -
HCH7g1774 272 Pfam Expansin C-terminal domain 172 255 IPR007117 -
HCH7g1774 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 170 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0817 HCH-Chr2:51732707 HCH7g1774 HCH-Chr7:49319079 5.00E-66 dispersed
HCH7g0158 HCH-Chr7:1059523 HCH7g1774 HCH-Chr7:49319079 9.70E-65 dispersed
HCH7g1773 HCH-Chr7:49316647 HCH7g1774 HCH-Chr7:49319079 5.20E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1774 - - - 0.0