Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1783 ATGGCTAAGAAACCCGGATCTTCCTCATGGTTCACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAACACGACTCTGATGACAAGAAAAGAGAGAAACGGAGATGGATTTTCAGACGATCTACAAATCTACAAGAAACGCAATCATCCGAGCCATCAAACCATCCATCTTCCGATCATACCCTTGCCGTCGCCGCCGCCGAAGTTGCAATGGCCACCGCACAAGCTGCTGTAGAAGTTGCTCGTTTAACCAAGCCACATTTTAATCATGATAGAGATAATTATGCAGCGATTGTTATCCAAACTGCTTTTAGAGGTTACTTGGCAAGAAGAGCTTTGCGTGCGCTTAAGGGGCTTGTAAAGTTGCAAGCTTTGGTAAGAGGTCATAATGTGAGAAAGCAAGCAAAGATGACTCTTCGATGCATGCAAGCGTTGGTTAGAGTTCAAAATAGAGTGCTTGATCAACGAATGAGACTTTCTCATGAAGGCACTCGAAAATCTGCTATTAGTGATACTAATAGTGTTTTTGAACCTCGTTATCTTCATAACTTCTCTGACAGAAAATCCGTTTCTCAGGTAAGGGAAGGGAGTAGTATTCCAGATGATTGGGATGAACGTCCACATACCATTGAAGAAGTTAAAGCAATGCTTCAACATAGAAAAGAGATTGCAATGAAACGAGATAAGAATCTCTCTCACTCCTTCTCTCAGCAGATATGGAGGAGAGGTAGAAGTCCATCAATGGGAAGTGGAGATGAGCTTGAAGAAAGGCCTAGATGGCTAGATCAATGGAATGGGAATGGGAGGAAGCCATGGGAAAACAAGGGAAGAGCTTCTACTGATCAAAGAGATCCAATCAAAACAGTTGAAATCGACACTTATCAACCTTACTCTTATACTACATCTACAAATTTAAGAAGAGCGACTTCAAATCAACAAAGATCTAATCCACATTCCATGAATTCACCACTCCACAGGACACAACCGAATGTTGTACCTTCCTCCATCCACCACTCCCCCGTCACGCCTTCGCCGTCGAAAACACGGCCTCTGCAAGTCCGATCGGCTAGCCCGCGTTTTGTTAGAGATGATAAAAGCGACAATACATCACAAACACCAAGTTTGAGGTCAAACTACAACTATTACTACAGTGGTAATTTGCTTCAACAAAGTAGGATTGTTGGATCAAGTAGCAGTTATAACCAGGGAGCTTATATGCCTAATTACATGGCAGCAACGGAGTCTGCAAAAGCTCGAATTCGGTCACAGAGTGCACCAAGGCAAAGGCCCTCGACGCCGGAGAGGGAGAGGGGCATTGGATCTGCCAAGAAAAGGCTTTCTTTTCCAGCTGCTCCAGATACAGCAGGAGGGGGAATGGGAATTGGATATGGAGGTTATGATCGTAATTTGAGGAGTCCAAGCTTCAAAAGTGTGAGTGGGGCATACCAAAAATCAAACTATTCATCTTGCTGCACAGACAGCCTTGGTGGAGAGATTTCCCCATCTTCAACCAGTGATCTAAGAAGGTGGCTAAGGTGA 1539 44.18 MAKKPGSSSWFTAVKRAFRSPSKHDSDDKKREKRRWIFRRSTNLQETQSSEPSNHPSSDHTLAVAAAEVAMATAQAAVEVARLTKPHFNHDRDNYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQNRVLDQRMRLSHEGTRKSAISDTNSVFEPRYLHNFSDRKSVSQVREGSSIPDDWDERPHTIEEVKAMLQHRKEIAMKRDKNLSHSFSQQIWRRGRSPSMGSGDELEERPRWLDQWNGNGRKPWENKGRASTDQRDPIKTVEIDTYQPYSYTTSTNLRRATSNQQRSNPHSMNSPLHRTQPNVVPSSIHHSPVTPSPSKTRPLQVRSASPRFVRDDKSDNTSQTPSLRSNYNYYYSGNLLQQSRIVGSSSSYNQGAYMPNYMAATESAKARIRSQSAPRQRPSTPERERGIGSAKKRLSFPAAPDTAGGGMGIGYGGYDRNLRSPSFKSVSGAYQKSNYSSCCTDSLGGEISPSSTSDLRRWLR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49381077 49382987 + evm.model.ptg000013l.1783 HCH7g1783 549068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1783 512 SMART iq_5 92 114 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 SMART iq_5 115 136 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 MobiDBLite consensus disorder prediction 234 377 - -
HCH7g1783 512 Pfam IQ calmodulin-binding motif 120 136 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 Pfam IQ calmodulin-binding motif 96 114 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 ProSiteProfiles IQ motif profile. 117 144 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 18 40 - -
HCH7g1783 512 FunFam IQ-domain 11 92 143 - -
HCH7g1783 512 ProSiteProfiles IQ motif profile. 93 121 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 1 59 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 415 458 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 488 512 - -
HCH7g1783 512 PANTHER IQ-DOMAIN 5-RELATED 8 443 - -
HCH7g1783 512 Gene3D - 90 145 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 293 353 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 248 263 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 274 288 - -
HCH7g1783 512 Pfam Protein of unknown function (DUF4005) 357 462 IPR025064 -
HCH7g1783 512 MobiDBLite consensus disorder prediction 41 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1014 HCH-Chr13:27171300 HCH7g1783 HCH-Chr7:49381077 7.00E-162 dispersed
HCH13g1319 HCH-Chr13:41141005 HCH7g1783 HCH-Chr7:49381077 9.80E-11 dispersed
HCH4g0780 HCH-Chr4:5036195 HCH7g1783 HCH-Chr7:49381077 7.10E-07 dispersed
HCH7g1783 HCH-Chr7:49381077 HCH9g0605 HCH-Chr9:4048401 7.80E-23 dispersed
HCH7g1783 HCH-Chr7:49381077 HCH13g0419 HCH-Chr13:2901832 2.10E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1783 - - - 0.0