Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1783 ATGGCTAAGAAACCCGGATCTTCCTCATGGTTCACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAACACGACTCTGATGACAAGAAAAGAGAGAAACGGAGATGGATTTTCAGACGATCTACAAATCTACAAGAAACGCAATCATCCGAGCCATCAAACCATCCATCTTCCGATCATACCCTTGCCGTCGCCGCCGCCGAAGTTGCAATGGCCACCGCACAAGCTGCTGTAGAAGTTGCTCGTTTAACCAAGCCACATTTTAATCATGATAGAGATAATTATGCAGCGATTGTTATCCAAACTGCTTTTAGAGGTTACTTGGCAAGAAGAGCTTTGCGTGCGCTTAAGGGGCTTGTAAAGTTGCAAGCTTTGGTAAGAGGTCATAATGTGAGAAAGCAAGCAAAGATGACTCTTCGATGCATGCAAGCGTTGGTTAGAGTTCAAAATAGAGTGCTTGATCAACGAATGAGACTTTCTCATGAAGGCACTCGAAAATCTGCTATTAGTGATACTAATAGTGTTTTTGAACCTCGTTATCTTCATAACTTCTCTGACAGAAAATCCGTTTCTCAGGTAAGGGAAGGGAGTAGTATTCCAGATGATTGGGATGAACGTCCACATACCATTGAAGAAGTTAAAGCAATGCTTCAACATAGAAAAGAGATTGCAATGAAACGAGATAAGAATCTCTCTCACTCCTTCTCTCAGCAGATATGGAGGAGAGGTAGAAGTCCATCAATGGGAAGTGGAGATGAGCTTGAAGAAAGGCCTAGATGGCTAGATCAATGGAATGGGAATGGGAGGAAGCCATGGGAAAACAAGGGAAGAGCTTCTACTGATCAAAGAGATCCAATCAAAACAGTTGAAATCGACACTTATCAACCTTACTCTTATACTACATCTACAAATTTAAGAAGAGCGACTTCAAATCAACAAAGATCTAATCCACATTCCATGAATTCACCACTCCACAGGACACAACCGAATGTTGTACCTTCCTCCATCCACCACTCCCCCGTCACGCCTTCGCCGTCGAAAACACGGCCTCTGCAAGTCCGATCGGCTAGCCCGCGTTTTGTTAGAGATGATAAAAGCGACAATACATCACAAACACCAAGTTTGAGGTCAAACTACAACTATTACTACAGTGGTAATTTGCTTCAACAAAGTAGGATTGTTGGATCAAGTAGCAGTTATAACCAGGGAGCTTATATGCCTAATTACATGGCAGCAACGGAGTCTGCAAAAGCTCGAATTCGGTCACAGAGTGCACCAAGGCAAAGGCCCTCGACGCCGGAGAGGGAGAGGGGCATTGGATCTGCCAAGAAAAGGCTTTCTTTTCCAGCTGCTCCAGATACAGCAGGAGGGGGAATGGGAATTGGATATGGAGGTTATGATCGTAATTTGAGGAGTCCAAGCTTCAAAAGTGTGAGTGGGGCATACCAAAAATCAAACTATTCATCTTGCTGCACAGACAGCCTTGGTGGAGAGATTTCCCCATCTTCAACCAGTGATCTAAGAAGGTGGCTAAGGTGA 1539 44.18 MAKKPGSSSWFTAVKRAFRSPSKHDSDDKKREKRRWIFRRSTNLQETQSSEPSNHPSSDHTLAVAAAEVAMATAQAAVEVARLTKPHFNHDRDNYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQNRVLDQRMRLSHEGTRKSAISDTNSVFEPRYLHNFSDRKSVSQVREGSSIPDDWDERPHTIEEVKAMLQHRKEIAMKRDKNLSHSFSQQIWRRGRSPSMGSGDELEERPRWLDQWNGNGRKPWENKGRASTDQRDPIKTVEIDTYQPYSYTTSTNLRRATSNQQRSNPHSMNSPLHRTQPNVVPSSIHHSPVTPSPSKTRPLQVRSASPRFVRDDKSDNTSQTPSLRSNYNYYYSGNLLQQSRIVGSSSSYNQGAYMPNYMAATESAKARIRSQSAPRQRPSTPERERGIGSAKKRLSFPAAPDTAGGGMGIGYGGYDRNLRSPSFKSVSGAYQKSNYSSCCTDSLGGEISPSSTSDLRRWLR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49381077 49382987 + evm.model.ptg000013l.1783 HCH7g1783 549068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1783 512 SMART iq_5 92 114 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 SMART iq_5 115 136 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 MobiDBLite consensus disorder prediction 234 377 - -
HCH7g1783 512 Pfam IQ calmodulin-binding motif 120 136 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 Pfam IQ calmodulin-binding motif 96 114 IPR000048 GO:0005515(InterPro)
HCH7g1783 512 ProSiteProfiles IQ motif profile. 117 144 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 18 40 - -
HCH7g1783 512 FunFam IQ-domain 11 92 143 - -
HCH7g1783 512 ProSiteProfiles IQ motif profile. 93 121 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 1 59 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 415 458 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 488 512 - -
HCH7g1783 512 PANTHER IQ-DOMAIN 5-RELATED 8 443 - -
HCH7g1783 512 Gene3D - 90 145 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 293 353 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 248 263 - -
HCH7g1783 512 MobiDBLite consensus disorder prediction 274 288 - -
HCH7g1783 512 Pfam Protein of unknown function (DUF4005) 357 462 IPR025064 -
HCH7g1783 512 MobiDBLite consensus disorder prediction 41 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1783 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1014 HCH-Chr13:27171300 HCH7g1783 HCH-Chr7:49381077 7.00E-162 dispersed
HCH13g1319 HCH-Chr13:41141005 HCH7g1783 HCH-Chr7:49381077 9.80E-11 dispersed
HCH4g0780 HCH-Chr4:5036195 HCH7g1783 HCH-Chr7:49381077 7.10E-07 dispersed
HCH7g1783 HCH-Chr7:49381077 HCH9g0605 HCH-Chr9:4048401 7.80E-23 dispersed
HCH7g1783 HCH-Chr7:49381077 HCH13g0419 HCH-Chr13:2901832 2.10E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54