Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g1783 | ATGGCTAAGAAACCCGGATCTTCCTCATGGTTCACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAACACGACTCTGATGACAAGAAAAGAGAGAAACGGAGATGGATTTTCAGACGATCTACAAATCTACAAGAAACGCAATCATCCGAGCCATCAAACCATCCATCTTCCGATCATACCCTTGCCGTCGCCGCCGCCGAAGTTGCAATGGCCACCGCACAAGCTGCTGTAGAAGTTGCTCGTTTAACCAAGCCACATTTTAATCATGATAGAGATAATTATGCAGCGATTGTTATCCAAACTGCTTTTAGAGGTTACTTGGCAAGAAGAGCTTTGCGTGCGCTTAAGGGGCTTGTAAAGTTGCAAGCTTTGGTAAGAGGTCATAATGTGAGAAAGCAAGCAAAGATGACTCTTCGATGCATGCAAGCGTTGGTTAGAGTTCAAAATAGAGTGCTTGATCAACGAATGAGACTTTCTCATGAAGGCACTCGAAAATCTGCTATTAGTGATACTAATAGTGTTTTTGAACCTCGTTATCTTCATAACTTCTCTGACAGAAAATCCGTTTCTCAGGTAAGGGAAGGGAGTAGTATTCCAGATGATTGGGATGAACGTCCACATACCATTGAAGAAGTTAAAGCAATGCTTCAACATAGAAAAGAGATTGCAATGAAACGAGATAAGAATCTCTCTCACTCCTTCTCTCAGCAGATATGGAGGAGAGGTAGAAGTCCATCAATGGGAAGTGGAGATGAGCTTGAAGAAAGGCCTAGATGGCTAGATCAATGGAATGGGAATGGGAGGAAGCCATGGGAAAACAAGGGAAGAGCTTCTACTGATCAAAGAGATCCAATCAAAACAGTTGAAATCGACACTTATCAACCTTACTCTTATACTACATCTACAAATTTAAGAAGAGCGACTTCAAATCAACAAAGATCTAATCCACATTCCATGAATTCACCACTCCACAGGACACAACCGAATGTTGTACCTTCCTCCATCCACCACTCCCCCGTCACGCCTTCGCCGTCGAAAACACGGCCTCTGCAAGTCCGATCGGCTAGCCCGCGTTTTGTTAGAGATGATAAAAGCGACAATACATCACAAACACCAAGTTTGAGGTCAAACTACAACTATTACTACAGTGGTAATTTGCTTCAACAAAGTAGGATTGTTGGATCAAGTAGCAGTTATAACCAGGGAGCTTATATGCCTAATTACATGGCAGCAACGGAGTCTGCAAAAGCTCGAATTCGGTCACAGAGTGCACCAAGGCAAAGGCCCTCGACGCCGGAGAGGGAGAGGGGCATTGGATCTGCCAAGAAAAGGCTTTCTTTTCCAGCTGCTCCAGATACAGCAGGAGGGGGAATGGGAATTGGATATGGAGGTTATGATCGTAATTTGAGGAGTCCAAGCTTCAAAAGTGTGAGTGGGGCATACCAAAAATCAAACTATTCATCTTGCTGCACAGACAGCCTTGGTGGAGAGATTTCCCCATCTTCAACCAGTGATCTAAGAAGGTGGCTAAGGTGA | 1539 | 44.18 | MAKKPGSSSWFTAVKRAFRSPSKHDSDDKKREKRRWIFRRSTNLQETQSSEPSNHPSSDHTLAVAAAEVAMATAQAAVEVARLTKPHFNHDRDNYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQNRVLDQRMRLSHEGTRKSAISDTNSVFEPRYLHNFSDRKSVSQVREGSSIPDDWDERPHTIEEVKAMLQHRKEIAMKRDKNLSHSFSQQIWRRGRSPSMGSGDELEERPRWLDQWNGNGRKPWENKGRASTDQRDPIKTVEIDTYQPYSYTTSTNLRRATSNQQRSNPHSMNSPLHRTQPNVVPSSIHHSPVTPSPSKTRPLQVRSASPRFVRDDKSDNTSQTPSLRSNYNYYYSGNLLQQSRIVGSSSSYNQGAYMPNYMAATESAKARIRSQSAPRQRPSTPERERGIGSAKKRLSFPAAPDTAGGGMGIGYGGYDRNLRSPSFKSVSGAYQKSNYSSCCTDSLGGEISPSSTSDLRRWLR | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 49381077 | 49382987 | + | evm.model.ptg000013l.1783 | HCH7g1783 | 549068 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g1783 | 512 | SMART | iq_5 | 92 | 114 | IPR000048 | GO:0005515(InterPro) | |
HCH7g1783 | 512 | SMART | iq_5 | 115 | 136 | IPR000048 | GO:0005515(InterPro) | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 234 | 377 | - | - | |
HCH7g1783 | 512 | Pfam | IQ calmodulin-binding motif | 120 | 136 | IPR000048 | GO:0005515(InterPro) | |
HCH7g1783 | 512 | Pfam | IQ calmodulin-binding motif | 96 | 114 | IPR000048 | GO:0005515(InterPro) | |
HCH7g1783 | 512 | ProSiteProfiles | IQ motif profile. | 117 | 144 | - | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 18 | 40 | - | - | |
HCH7g1783 | 512 | FunFam | IQ-domain 11 | 92 | 143 | - | - | |
HCH7g1783 | 512 | ProSiteProfiles | IQ motif profile. | 93 | 121 | - | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 415 | 458 | - | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 488 | 512 | - | - | |
HCH7g1783 | 512 | PANTHER | IQ-DOMAIN 5-RELATED | 8 | 443 | - | - | |
HCH7g1783 | 512 | Gene3D | - | 90 | 145 | - | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 293 | 353 | - | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 248 | 263 | - | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 274 | 288 | - | - | |
HCH7g1783 | 512 | Pfam | Protein of unknown function (DUF4005) | 357 | 462 | IPR025064 | - | |
HCH7g1783 | 512 | MobiDBLite | consensus disorder prediction | 41 | 59 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1014 | HCH-Chr13:27171300 | HCH7g1783 | HCH-Chr7:49381077 | 7.00E-162 | dispersed | |
HCH13g1319 | HCH-Chr13:41141005 | HCH7g1783 | HCH-Chr7:49381077 | 9.80E-11 | dispersed | |
HCH4g0780 | HCH-Chr4:5036195 | HCH7g1783 | HCH-Chr7:49381077 | 7.10E-07 | dispersed | |
HCH7g1783 | HCH-Chr7:49381077 | HCH9g0605 | HCH-Chr9:4048401 | 7.80E-23 | dispersed | |
HCH7g1783 | HCH-Chr7:49381077 | HCH13g0419 | HCH-Chr13:2901832 | 2.10E-36 | transposed |
Pathway information
