Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g1795 | ATGGAAGAAGGATCAGAAAGATCAGGGGTTGGGGTTTCCAATTATGAACTCCAAGTCTCAGGCTTCTCAAATGCACCACAAGCCATCCATGAAATGGGGTTTGTGCAGTTTGAAGATAACCAAGCTGTTTTAAGCTTTTTGGCTCCTAATTCACAAAACGGCAGCACTACTACACCAACCACCGCCGTCAATACCAATACCAACACCACCACCACCACCATGGCTGCCTTATTCACTACTAATAATACTCATACTCACGCCCATCTTGTTTCCAGACCTTCTTGGAATAACGAGCAGGTTGGAACATTGGATCCAAAGCCTGTTAATGAAGAAAACTGCACTGGCAGTGCCAGCGATGGTAGCAATTCATGGTGGAGAAGCTCAGGCGGGGATAAGAGTAAAGTGAAGGTAAGGAGAAAGCTGAGAGAACCACGCTTCTGTTTTCAGACCAGAAGTGATGTAGATGTCTTGGATGATGGTTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCCAGAAGTTACTATCGTTGTACTCATAGTAACTGTCGGGTGAAGAAGAGGGTGGAACGACTTTCCGAAGATTGTCGAATGGTGATAACCACGTATGAAGGCAGACACAACCACTCCCCTTGCGATGATTCCAATTCATCCGAGCATGAAGGCTTTTCATCTTTTTGA | 696 | 44.83 | MEEGSERSGVGVSNYELQVSGFSNAPQAIHEMGFVQFEDNQAVLSFLAPNSQNGSTTTPTTAVNTNTNTTTTTMAALFTTNNTHTHAHLVSRPSWNNEQVGTLDPKPVNEENCTGSASDGSNSWWRSSGGDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEGFSSF | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 49521096 | 49523076 | - | evm.model.ptg000013l.1795 | HCH7g1795 | 549080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g1795 | 231 | ProSiteProfiles | WRKY domain profile. | 152 | 214 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g1795 | 231 | MobiDBLite | consensus disorder prediction | 112 | 131 | - | - | |
HCH7g1795 | 231 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 79 | 223 | IPR044810 | GO:0003700(InterPro) | |
HCH7g1795 | 231 | FunFam | WRKY transcription factor 57 | 143 | 217 | - | - | |
HCH7g1795 | 231 | SUPERFAMILY | WRKY DNA-binding domain | 149 | 215 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g1795 | 231 | Pfam | WRKY DNA -binding domain | 158 | 214 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g1795 | 231 | SMART | WRKY_cls | 157 | 216 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH7g1795 | 231 | MobiDBLite | consensus disorder prediction | 112 | 129 | - | - | |
HCH7g1795 | 231 | MobiDBLite | consensus disorder prediction | 212 | 231 | - | - | |
HCH7g1795 | 231 | Gene3D | WRKY domain | 144 | 210 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0263 | HCH-Chr1:43134930 | HCH7g1795 | HCH-Chr7:49521096 | 1.70E-09 | dispersed | |
HCH2g0155 | HCH-Chr2:11193089 | HCH7g1795 | HCH-Chr7:49521096 | 4.50E-37 | dispersed | |
HCH7g1795 | HCH-Chr7:49521096 | HCH9g0052 | HCH-Chr9:321993 | 1.50E-29 | dispersed | |
HCH7g1795 | HCH-Chr7:49521096 | HCH14g0184 | HCH-Chr14:27738487 | 6.60E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33964 | PF03106 | WRKY | 1.50E-24 | CL0274 | HCH | TF |
Pathway information
