Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1795 ATGGAAGAAGGATCAGAAAGATCAGGGGTTGGGGTTTCCAATTATGAACTCCAAGTCTCAGGCTTCTCAAATGCACCACAAGCCATCCATGAAATGGGGTTTGTGCAGTTTGAAGATAACCAAGCTGTTTTAAGCTTTTTGGCTCCTAATTCACAAAACGGCAGCACTACTACACCAACCACCGCCGTCAATACCAATACCAACACCACCACCACCACCATGGCTGCCTTATTCACTACTAATAATACTCATACTCACGCCCATCTTGTTTCCAGACCTTCTTGGAATAACGAGCAGGTTGGAACATTGGATCCAAAGCCTGTTAATGAAGAAAACTGCACTGGCAGTGCCAGCGATGGTAGCAATTCATGGTGGAGAAGCTCAGGCGGGGATAAGAGTAAAGTGAAGGTAAGGAGAAAGCTGAGAGAACCACGCTTCTGTTTTCAGACCAGAAGTGATGTAGATGTCTTGGATGATGGTTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCCAGAAGTTACTATCGTTGTACTCATAGTAACTGTCGGGTGAAGAAGAGGGTGGAACGACTTTCCGAAGATTGTCGAATGGTGATAACCACGTATGAAGGCAGACACAACCACTCCCCTTGCGATGATTCCAATTCATCCGAGCATGAAGGCTTTTCATCTTTTTGA 696 44.83 MEEGSERSGVGVSNYELQVSGFSNAPQAIHEMGFVQFEDNQAVLSFLAPNSQNGSTTTPTTAVNTNTNTTTTTMAALFTTNNTHTHAHLVSRPSWNNEQVGTLDPKPVNEENCTGSASDGSNSWWRSSGGDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEGFSSF 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49521096 49523076 - evm.model.ptg000013l.1795 HCH7g1795 549080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1795 231 ProSiteProfiles WRKY domain profile. 152 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1795 231 MobiDBLite consensus disorder prediction 112 131 - -
HCH7g1795 231 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 223 IPR044810 GO:0003700(InterPro)
HCH7g1795 231 FunFam WRKY transcription factor 57 143 217 - -
HCH7g1795 231 SUPERFAMILY WRKY DNA-binding domain 149 215 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1795 231 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1795 231 SMART WRKY_cls 157 216 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1795 231 MobiDBLite consensus disorder prediction 112 129 - -
HCH7g1795 231 MobiDBLite consensus disorder prediction 212 231 - -
HCH7g1795 231 Gene3D WRKY domain 144 210 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0263 HCH-Chr1:43134930 HCH7g1795 HCH-Chr7:49521096 1.70E-09 dispersed
HCH2g0155 HCH-Chr2:11193089 HCH7g1795 HCH-Chr7:49521096 4.50E-37 dispersed
HCH7g1795 HCH-Chr7:49521096 HCH9g0052 HCH-Chr9:321993 1.50E-29 dispersed
HCH7g1795 HCH-Chr7:49521096 HCH14g0184 HCH-Chr14:27738487 6.60E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33964 PF03106 WRKY 1.50E-24 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1795 - - - 0.0