Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1801 ATGGAATTGGAGCATTTGTTTGGAAAGGTTGCCACTCCAAGCGATGTAGGTAAGCTAAACAGACTGGTGATACCAAAGGCATGTGCTGAGAAGTACTTCCCTGATCTGGATTCTCCAACAAAAAAGAAAATAGGAACCCATTTGAATTTCCAAGATTCAAATGGAAAATCATGGTGTTTCCGATACTCATACTGGAGTAGCAGCCAGAGCTATGTAATGACCAAAGGTTGGAGCCGTTTCGTGAAGGAAAACAAACTTCATGCAGGAGATGTCATTTCTTTTAGCAGAAAATACGGTGGTGGTAGTAGTTGCCTCTACATTGATTACAGACGGAGAAACGACCTTAATCATGTTCATGGGGGCAGGACTAGTGTAGGTGTGGTGAATAAATATAAATACAAATTCAAAAAGACATCACCCATATCACAACATCATCAGAATATGGCATTGCCATTGATAATTGATTCGATGCACGAGCATAACGAGGTGGTCCGGGAACATATTATCACTACACCAAAACATTTTCGGTTATTCGGAGTAGACGTTGAGATGTTTGAATCAACAACTCCCGTCCCCGGTTATTCTTCTTTATAA 594 40.57 MELEHLFGKVATPSDVGKLNRLVIPKACAEKYFPDLDSPTKKKIGTHLNFQDSNGKSWCFRYSYWSSSQSYVMTKGWSRFVKENKLHAGDVISFSRKYGGGSSCLYIDYRRRNDLNHVHGGRTSVGVVNKYKYKFKKTSPISQHHQNMALPLIIDSMHEHNEVVREHIITTPKHFRLFGVDVEMFESTTPVPGYSSL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49546770 49547363 - evm.model.ptg000013l.1801 HCH7g1801 549086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1801 197 SMART B3_2 7 113 IPR003340 GO:0003677(InterPro)
HCH7g1801 197 Gene3D - 1 123 IPR015300 -
HCH7g1801 197 ProSiteProfiles B3 DNA-binding domain profile. 7 113 IPR003340 GO:0003677(InterPro)
HCH7g1801 197 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 2 181 IPR044800 GO:0003700(InterPro)
HCH7g1801 197 SUPERFAMILY DNA-binding pseudobarrel domain 5 106 IPR015300 -
HCH7g1801 197 Pfam B3 DNA binding domain 7 97 IPR003340 GO:0003677(InterPro)
HCH7g1801 197 CDD B3_DNA 5 107 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0612 HCH-Chr5:4302873 HCH7g1801 HCH-Chr7:49546770 1.40E-35 dispersed
HCH7g1801 HCH-Chr7:49546770 HCH8g0487 HCH-Chr8:41117571 1.80E-23 dispersed
HCH7g1801 HCH-Chr7:49546770 HCH10g1245 HCH-Chr10:44281681 6.60E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33967 PF02362 B3 6.40E-27 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1801 K09287 - cit:102629913 160.229