Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1803 ATGGAGAGGCTCCAAGGACCCATTAATCCTTATTTTTATGGTGAAAATTTAGATGGGGGTTGCTCAGAACATGGATTAACAAGCTTGGGATTCGATGAATTAGAAGAAGCCTATTTCTTAACATCAAGTTTGGAAGATAAAATGCCATTTCTTCAAATGCTGCAAAGTGTAGAATCTCAACAATTCAAAGAGCCTAACTTTCAAACCCTGTTAAGGCTACAGCACCTTCAGGAGTTGTATTCTTCACCGATTAAATCAGGTTCAGGGCTGAGTTCAGACTGTAACCAAAATCAAACAAACTCTCGTCGGACCCAAATGGACAAATCTTCTCCAGTGGCAGCCATCAGAGAAAGAAGAAAACGAAAGAGAACAAGACCAGCTAAGAACAAGGAAGAAGTGGAGAGTCAAAGAATGACACACATTGCCGTTGAGCGCAACCGTAGACGCCAAATGAATGACCATCTCAACGTTATCAAATCTCTTATACCCACCTCCTATGTTCAAAGGGGTGATCAAGCATCTATAATTGGGGGTGCAATAGACTTTGTAAAGGAATTGGAGCAATTACTTGAATCTTTGGAAGCACAAAGGAAGGAAAAGAAAGGAGAAGAAGGTGGGTGTAAGGGTGTTTATTCAGTAAGCTCACCCACATCCTCTGACATGGGAATGGGAGTGGCCTCAAAGTCAAATGGGTTTGTTATGGAAAGAAGAATAGGAGAAGGAGTTTGTGCAGAACACAAGTCAGAAGTGGCTGAAATAGAGGTGACTCTGATTCAAACCCATGTTAACTTGAAGATAAAATGCCCCAAAAAGCAAGGCCAATTGTTGAAAGCCATTGTTGCTTTGGAAGATCTTAGGCTTACAATTCTGCATCTCAACATTACCACCTCTCAAGCCACTGCCACAATGCTTTACTCTTTCAATCTCAAGATGGAAGATGAATGTAAGCTAGGATCAGCTGAGCAGATTGCATCAACGGTTCATCAAATATTAAGTTTGATCAATGAAAGCTGA 1014 40.93 MERLQGPINPYFYGENLDGGCSEHGLTSLGFDELEEAYFLTSSLEDKMPFLQMLQSVESQQFKEPNFQTLLRLQHLQELYSSPIKSGSGLSSDCNQNQTNSRRTQMDKSSPVAAIRERRKRKRTRPAKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTSYVQRGDQASIIGGAIDFVKELEQLLESLEAQRKEKKGEEGGCKGVYSVSSPTSSDMGMGVASKSNGFVMERRIGEGVCAEHKSEVAEIEVTLIQTHVNLKIKCPKKQGQLLKAIVALEDLRLTILHLNITTSQATATMLYSFNLKMEDECKLGSAEQIASTVHQILSLINES 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49575722 49577639 - evm.model.ptg000013l.1803 HCH7g1803 549088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1803 337 SMART finulus 141 192 IPR011598 GO:0046983(InterPro)
HCH7g1803 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 203 IPR036638 GO:0046983(InterPro)
HCH7g1803 337 Gene3D - 126 203 IPR036638 GO:0046983(InterPro)
HCH7g1803 337 MobiDBLite consensus disorder prediction 84 108 - -
HCH7g1803 337 Coils Coil 179 203 - -
HCH7g1803 337 PANTHER TRANSCRIPTION FACTOR FAMA 54 332 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
HCH7g1803 337 MobiDBLite consensus disorder prediction 200 222 - -
HCH7g1803 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983(InterPro)
HCH7g1803 337 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983(InterPro)
HCH7g1803 337 MobiDBLite consensus disorder prediction 84 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1424 HCH-Chr7:46983964 HCH7g1803 HCH-Chr7:49575722 3.10E-41 dispersed
HCH7g1803 HCH-Chr7:49575722 HCH8g0136 HCH-Chr8:5460207 1.70E-39 dispersed
HCH7g1803 HCH-Chr7:49575722 HCH10g0828 HCH-Chr10:9191465 5.80E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33968 PF00010 HLH 9.20E-10 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1803 - - - 0.0