Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0009 ATGTCTTCTTCAAGACCCAGCCAGTCTTCCAGCAACTCCGGTCGTTCCAGACACAGCACCCGCATCATCGCTCAAACATCCGTCGACGCCAAGCTCCAAGCTAACTTTGAGGAATCCGGGAGTTCCTTCGACTACTCCACTTCTGTCCGTGTCACCAGCACAGATGTCAGTCCCGGCCAACCACCGAGGTCCGACAAACTCACCACCGCATACCTCCATCACATCCAGAAAGGCAAACTCATCCAACCCTTTGGCTGCTTACTCGCCTTACACGACAAAACATTCAAGGTTATCGCTTACAGCGAAAACGCCCCTGAAATGCTCACCACCGTCACCCACGCCGTCCCTTCCATGGGTGATTACCCCGTTCTCGGCATCGGCACGGATGTCAGGGCTATCTTCACCGCACCCAGTGCCTCTGCTCTCTTCAAGGCCTTGTCTTTTGGGGAGGTTACCCTTCTCAACCCCATTCTTGTCCATTGCAAGACTTCTGGGAAGCCCTTCTATGCCATTGTGCACCGTGTCACCGGCAGCTTGATCATTGACTTTGAGCCTGTCAAGCCTTATGAAGTTCCTGTCACCGCTGCTGGTGCCCTTCAGTCTTATAAACTCGCCGCGAAAGCGATCACCCGTTTGCAGTCTCTGCCCAGTGGGAGCATAGCGAGGCTTTGTGACACCATGGTTCAAGAGGTTTTTGAACTCACGGGTTATGACAGGGTCATGGCTTATCGATTTCATGATGACGATCATGGGGAGGTTTTTTCTGAGGTTACCAAGCCTGGCCTTGAACCTTACTTGGGTTTGCATTATCCGGCCACCGACATTCCTCAAGCTTCCCGCTTTTTGTTCATGAAGAACAAGGTCCGCATGATTGTTGATTGCCGTGCAAAACAGGTCAAAGTGCTTCAAGACGAGAAACTTCAGTTTGATCTCACTTTATGTGGTTCAACATTGAGGGCTGCTCATAGCTGCCATCTGCAGTATATGGAGAACATGAACTCCATTGCCTCTTTGGTTATGGCAGTTGTGGTCAATGAGGGGGATGAAGATGGTGATCCCCCCCCTCCTTCGCAGCAGCAAAAGAGAAAGAGACTGTGGGGCTTAGTAGTATGTCATAATACAACCCCAAGATTTGTTCCTTTCCCTCTCAGGTATGCCTGTGAGTTTCTAGCTCAAGTATTTGCTATCCATGTGAGTAAGGAATTAGAGCTGGAAAATCAAATTTTAGAGAAAAGTATCCTGCGTACACAGACCCTTCTGTGCGACATGCTGATGCGTGACGCTCCTTTGGGCATCGTGTCAAGGAGCCCTAACATAATGGATCTTGTCAAGTCTGATGGGGCTGCTCTATTATATCAGAGCAAGATATGGAGATTGGGGATTACACCTACTGACTTCCAGCTGCAGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCGACGGGATTGAGTACTGACAGCTTGTATGATGCGGGATACCCGGGAGCTCTTGCTCTTGGTGATGCAGTGTGTGGGATGGCGGCTGTGAGGATATCTTCCAATGACGTGATTTTCTGGTTTCGCTCCCACACCGCAGCCGAAGTTCGATGGGGCGGTGCAAAGCATGAACCTAGTGAAAAGGATGATGGCAGGAAAATGCATCCGAGAACATCCTTCAAGGCTTTTCTTGAAGTAGTCAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTGCAGCTTATCCTCAGAAACACTCTTAAAAATACAGATATTATTGATAGTAACAGAAAATCAATCCAAGCGACGCTCAGCGACCTCAAAATTGAAGGGAGGCAAGAATTGGAATCGGTGACCAGTGAGATGGTTAGGTTAATTGAAACAGCTACGGTGCCGATATTGGCAGTTGATCTAGATGGGCTGGTTAATGGGTGGAATACTAAGATTGCTGAGTTGACTGGACTTCCCGTTGACAAAGCCATTGGCAAGCATTTGCTCACATTAGTCGAAGATTCTTCACTAGAAATTGTCAAAAAGATGTTGTTCTTGGCATTACAAGGACAAGAGGAGCAAAATGTTCAATTTGAGATCAAAACACATGGTTCTCATATCGAGTTTGGGTCTATCAGCTTACTTGTAAATGCTTGTGCAAGCAGGGACTTGCGAGATGATGTTGTGGGAGTGTGTTTTGTGGCTCAAGATATCACTGGTCAAAAGATGGTAATGGATAAGTTCACTCGGTTAGAAGGTGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCACCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCAGCAATGACAAAGTTAACTGGGTGGAAACGTGAAGAAGTTGTGGATAAGATGCTTTTGGGAGAGGTTTTTGGTACCCATAAGGCATGCTGTCGTCTAAAGAATCAAGAAGCTTTTGTAAATCTTGGTGTTGTTCTGAATAATGCCATGAGTGGTCAGGATCCCGAAAAGATTTCTTTTGGTTTCTCTGCCCGGAGTGGGATGTACGTGGAATGTATCCTATGTGTTAATAAGATATTGGACAGAGATGGTGCAGTCACTGGAGTTTTTTGCTTTTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCACTAAATATCCAGCGATTATGTGAGCGAACTGCATTAAAGAGATTGAAAACACTGGGTTATATGAAGAGGCAGATACAAAATCCTTTGGCTGGGGTCGTCTTTTCAAGGAAAATGTTGGAGTGTACTGAGTTGGTAACACGACAGCAACAGCTTTTGCAGAATAGTGCACACTGCCAAAGGCAGATTTCCAAGGTTCTCGATGAGTCAGATCTTGATAAAATTATTGACGGTTTCATTGAATTGGAAATGGTGGAGTTTACATTGCAAGAAGTATTGGAAGTATCTATTAGTCAAGTCATGATAAAGAGCAGAGGAAAGAGTGTCCAAATAGTAAATGAGGCTGCAGAAGAGATCATGTCTGAGACCTTATATGGAGACAATTTGAGGCTTCAACAAGTCCTAGCCGATTTCCTGGTGATATCAGTTAATTATGCACCGGCGGGAGGCCAGCTAACAGTTTCAGCCAGTTTGAGGAAGGATCAATTGGGAAAGTCAGTGCATCTTGTGCATCTGGAGTTCAGGATAACATATGCAGGTGGAGGTATACCGGAAGCGTTGCTGGACGAGATGTTTGGAAATGGGGAGGATGCGTCGGAGGAGGGTTTCAGCATGCTTATCAGCAGAAAACTGGTGAAGCTCATGAATGGAGATGTAAGGTATTTGAGGGAAGCAGGCAAGTCAAGTTTCATCATAACTGTTGAGCTTGCTGCAGCACACAAGTCAGGGACGTAG 3378 46.15 MSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQANFEESGSSFDYSTSVRVTSTDVSPGQPPRSDKLTTAYLHHIQKGKLIQPFGCLLALHDKTFKVIAYSENAPEMLTTVTHAVPSMGDYPVLGIGTDVRAIFTAPSASALFKALSFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSIARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCRAKQVKVLQDEKLQFDLTLCGSTLRAAHSCHLQYMENMNSIASLVMAVVVNEGDEDGDPPPPSQQQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVSKELELENQILEKSILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYQSKIWRLGITPTDFQLQDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRISSNDVIFWFRSHTAAEVRWGGAKHEPSEKDDGRKMHPRTSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTLKNTDIIDSNRKSIQATLSDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLVNGWNTKIAELTGLPVDKAIGKHLLTLVEDSSLEIVKKMLFLALQGQEEQNVQFEIKTHGSHIEFGSISLLVNACASRDLRDDVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWKREEVVDKMLLGEVFGTHKACCRLKNQEAFVNLGVVLNNAMSGQDPEKISFGFSARSGMYVECILCVNKILDRDGAVTGVFCFLQLASQELQQALNIQRLCERTALKRLKTLGYMKRQIQNPLAGVVFSRKMLECTELVTRQQQLLQNSAHCQRQISKVLDESDLDKIIDGFIELEMVEFTLQEVLEVSISQVMIKSRGKSVQIVNEAAEEIMSETLYGDNLRLQQVLADFLVISVNYAPAGGQLTVSASLRKDQLGKSVHLVHLEFRITYAGGGIPEALLDEMFGNGEDASEEGFSMLISRKLVKLMNGDVRYLREAGKSSFIITVELAAAHKSGT 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 963123 967521 + evm.model.ptg000008l.1526 HCH8g0009 549107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0009 1125 Gene3D - 407 580 IPR043150 -
HCH8g0009 1125 SUPERFAMILY GAF domain-like 410 587 - -
HCH8g0009 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
HCH8g0009 1125 Pfam Phytochrome region 415 589 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1114 IPR036890 -
HCH8g0009 1125 SMART pas_2 620 686 IPR000014 -
HCH8g0009 1125 SMART pas_2 750 819 IPR000014 -
HCH8g0009 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
HCH8g0009 1125 Pfam PAS fold 70 186 IPR013654 GO:0006355(InterPro)
HCH8g0009 1125 PANTHER OS08G0260000 PROTEIN 1 995 - -
HCH8g0009 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1117 IPR003594 -
HCH8g0009 1125 Pfam PAS fold 621 735 IPR013767 GO:0006355(InterPro)
HCH8g0009 1125 Pfam PAS fold 751 873 IPR013767 GO:0006355(InterPro)
HCH8g0009 1125 SUPERFAMILY GAF domain-like 199 398 - -
HCH8g0009 1125 Pfam GAF domain 221 401 IPR003018 GO:0005515(InterPro)
HCH8g0009 1125 SMART HKATPase_4 1007 1119 IPR003594 -
HCH8g0009 1125 FunFam Phytochrome 614 745 - -
HCH8g0009 1125 PIRSF Phytochrome_conventional 1 1125 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
HCH8g0009 1125 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
HCH8g0009 1125 FunFam Phytochrome 407 538 - -
HCH8g0009 1125 Gene3D PAS domain 765 880 - -
HCH8g0009 1125 CDD HATPase_Phy-like 1006 1117 IPR044767 -
HCH8g0009 1125 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
HCH8g0009 1125 SMART gaf_1 219 412 IPR003018 GO:0005515(InterPro)
HCH8g0009 1125 CDD PAS 629 735 IPR000014 -
HCH8g0009 1125 Gene3D PAS domain 613 750 - -
HCH8g0009 1125 Gene3D - 932 1113 IPR036890 -
HCH8g0009 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
HCH8g0009 1125 CDD PAS 762 873 IPR000014 -
HCH8g0009 1125 Gene3D - 200 563 IPR029016 -
HCH8g0009 1125 MobiDBLite consensus disorder prediction 1 24 - -
HCH8g0009 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
HCH8g0009 1125 Gene3D PAS domain 75 322 - -
HCH8g0009 1125 ProSiteProfiles Histidine kinase domain profile. 902 1121 IPR005467 -
HCH8g0009 1125 NCBIfam PAS domain S-box protein 625 741 IPR000014 -
HCH8g0009 1125 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0009 K12120 - - csv:101208491 1943.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0347 HCH-Chr7:2483094 HCH8g0009 HCH-Chr8:963123 0.00E+00 dispersed
HCH7g1026 HCH-Chr7:41814062 HCH8g0009 HCH-Chr8:963123 0.00E+00 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g1345 . 3 1232 Histidine Kinase Gene Family AT2G17820 63.6 0.0e+00 1460.3
HCH1g0075 . 18 991 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1352.4
HCH10g1380 . 20 985 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1323.9
HCH7g0328 . 278 1230 Histidine Kinase Gene Family AT2G01830 53.6 9.0e-276 946.8
HCH10g0077 . 58 1008 Histidine Kinase Gene Family AT2G01830 53.2 1.3e-274 943.0
HCH2g0666 . 287 1240 Histidine Kinase Gene Family AT2G01830 52.7 4.1e-268 921.4
HCH12g0444 . 1 987 Histidine Kinase Gene Family AT5G10720 58.5 1.4e-296 1015.8
HCH8g0009 . 1 1122 Histidine Kinase Gene Family AT1G09570 78.6 0.0e+00 1788.9
HCH7g0347 . 13 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.9
HCH7g1026 . 41 1127 Histidine Kinase Gene Family AT1G09570 54.2 0.0e+00 1189.1
HCH7g1026 . 37 1068 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1662.5
HCH3g0755 . 10 1023 Histidine Kinase Gene Family AT2G18790 58.8 0.0e+00 1216.8
HCH7g0347 . 27 1068 Histidine Kinase Gene Family AT2G18790 52.6 1.1e-311 1066.2
HCH8g0009 . 21 1056 Histidine Kinase Gene Family AT2G18790 51.5 1.6e-310 1062.4
HCH7g0347 . 20 1115 Histidine Kinase Gene Family AT5G35840 63.1 0.0e+00 1389.0
HCH7g1026 . 41 1129 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1149.0
HCH8g0009 . 9 1116 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1107.8
HCH7g1026 . 37 1129 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1700.3
HCH3g0755 . 10 1095 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1252.7
HCH8g0009 . 8 1117 Histidine Kinase Gene Family AT4G16250 51.5 0.0e+00 1120.5
HCH7g0347 . 19 1114 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1114.0
HCH3g0755 . 24 1109 Histidine Kinase Gene Family AT4G18130 61.6 0.0e+00 1335.1
HCH7g1026 . 45 1127 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56