Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0009 ATGTCTTCTTCAAGACCCAGCCAGTCTTCCAGCAACTCCGGTCGTTCCAGACACAGCACCCGCATCATCGCTCAAACATCCGTCGACGCCAAGCTCCAAGCTAACTTTGAGGAATCCGGGAGTTCCTTCGACTACTCCACTTCTGTCCGTGTCACCAGCACAGATGTCAGTCCCGGCCAACCACCGAGGTCCGACAAACTCACCACCGCATACCTCCATCACATCCAGAAAGGCAAACTCATCCAACCCTTTGGCTGCTTACTCGCCTTACACGACAAAACATTCAAGGTTATCGCTTACAGCGAAAACGCCCCTGAAATGCTCACCACCGTCACCCACGCCGTCCCTTCCATGGGTGATTACCCCGTTCTCGGCATCGGCACGGATGTCAGGGCTATCTTCACCGCACCCAGTGCCTCTGCTCTCTTCAAGGCCTTGTCTTTTGGGGAGGTTACCCTTCTCAACCCCATTCTTGTCCATTGCAAGACTTCTGGGAAGCCCTTCTATGCCATTGTGCACCGTGTCACCGGCAGCTTGATCATTGACTTTGAGCCTGTCAAGCCTTATGAAGTTCCTGTCACCGCTGCTGGTGCCCTTCAGTCTTATAAACTCGCCGCGAAAGCGATCACCCGTTTGCAGTCTCTGCCCAGTGGGAGCATAGCGAGGCTTTGTGACACCATGGTTCAAGAGGTTTTTGAACTCACGGGTTATGACAGGGTCATGGCTTATCGATTTCATGATGACGATCATGGGGAGGTTTTTTCTGAGGTTACCAAGCCTGGCCTTGAACCTTACTTGGGTTTGCATTATCCGGCCACCGACATTCCTCAAGCTTCCCGCTTTTTGTTCATGAAGAACAAGGTCCGCATGATTGTTGATTGCCGTGCAAAACAGGTCAAAGTGCTTCAAGACGAGAAACTTCAGTTTGATCTCACTTTATGTGGTTCAACATTGAGGGCTGCTCATAGCTGCCATCTGCAGTATATGGAGAACATGAACTCCATTGCCTCTTTGGTTATGGCAGTTGTGGTCAATGAGGGGGATGAAGATGGTGATCCCCCCCCTCCTTCGCAGCAGCAAAAGAGAAAGAGACTGTGGGGCTTAGTAGTATGTCATAATACAACCCCAAGATTTGTTCCTTTCCCTCTCAGGTATGCCTGTGAGTTTCTAGCTCAAGTATTTGCTATCCATGTGAGTAAGGAATTAGAGCTGGAAAATCAAATTTTAGAGAAAAGTATCCTGCGTACACAGACCCTTCTGTGCGACATGCTGATGCGTGACGCTCCTTTGGGCATCGTGTCAAGGAGCCCTAACATAATGGATCTTGTCAAGTCTGATGGGGCTGCTCTATTATATCAGAGCAAGATATGGAGATTGGGGATTACACCTACTGACTTCCAGCTGCAGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCGACGGGATTGAGTACTGACAGCTTGTATGATGCGGGATACCCGGGAGCTCTTGCTCTTGGTGATGCAGTGTGTGGGATGGCGGCTGTGAGGATATCTTCCAATGACGTGATTTTCTGGTTTCGCTCCCACACCGCAGCCGAAGTTCGATGGGGCGGTGCAAAGCATGAACCTAGTGAAAAGGATGATGGCAGGAAAATGCATCCGAGAACATCCTTCAAGGCTTTTCTTGAAGTAGTCAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTGCAGCTTATCCTCAGAAACACTCTTAAAAATACAGATATTATTGATAGTAACAGAAAATCAATCCAAGCGACGCTCAGCGACCTCAAAATTGAAGGGAGGCAAGAATTGGAATCGGTGACCAGTGAGATGGTTAGGTTAATTGAAACAGCTACGGTGCCGATATTGGCAGTTGATCTAGATGGGCTGGTTAATGGGTGGAATACTAAGATTGCTGAGTTGACTGGACTTCCCGTTGACAAAGCCATTGGCAAGCATTTGCTCACATTAGTCGAAGATTCTTCACTAGAAATTGTCAAAAAGATGTTGTTCTTGGCATTACAAGGACAAGAGGAGCAAAATGTTCAATTTGAGATCAAAACACATGGTTCTCATATCGAGTTTGGGTCTATCAGCTTACTTGTAAATGCTTGTGCAAGCAGGGACTTGCGAGATGATGTTGTGGGAGTGTGTTTTGTGGCTCAAGATATCACTGGTCAAAAGATGGTAATGGATAAGTTCACTCGGTTAGAAGGTGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCACCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCAGCAATGACAAAGTTAACTGGGTGGAAACGTGAAGAAGTTGTGGATAAGATGCTTTTGGGAGAGGTTTTTGGTACCCATAAGGCATGCTGTCGTCTAAAGAATCAAGAAGCTTTTGTAAATCTTGGTGTTGTTCTGAATAATGCCATGAGTGGTCAGGATCCCGAAAAGATTTCTTTTGGTTTCTCTGCCCGGAGTGGGATGTACGTGGAATGTATCCTATGTGTTAATAAGATATTGGACAGAGATGGTGCAGTCACTGGAGTTTTTTGCTTTTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCACTAAATATCCAGCGATTATGTGAGCGAACTGCATTAAAGAGATTGAAAACACTGGGTTATATGAAGAGGCAGATACAAAATCCTTTGGCTGGGGTCGTCTTTTCAAGGAAAATGTTGGAGTGTACTGAGTTGGTAACACGACAGCAACAGCTTTTGCAGAATAGTGCACACTGCCAAAGGCAGATTTCCAAGGTTCTCGATGAGTCAGATCTTGATAAAATTATTGACGGTTTCATTGAATTGGAAATGGTGGAGTTTACATTGCAAGAAGTATTGGAAGTATCTATTAGTCAAGTCATGATAAAGAGCAGAGGAAAGAGTGTCCAAATAGTAAATGAGGCTGCAGAAGAGATCATGTCTGAGACCTTATATGGAGACAATTTGAGGCTTCAACAAGTCCTAGCCGATTTCCTGGTGATATCAGTTAATTATGCACCGGCGGGAGGCCAGCTAACAGTTTCAGCCAGTTTGAGGAAGGATCAATTGGGAAAGTCAGTGCATCTTGTGCATCTGGAGTTCAGGATAACATATGCAGGTGGAGGTATACCGGAAGCGTTGCTGGACGAGATGTTTGGAAATGGGGAGGATGCGTCGGAGGAGGGTTTCAGCATGCTTATCAGCAGAAAACTGGTGAAGCTCATGAATGGAGATGTAAGGTATTTGAGGGAAGCAGGCAAGTCAAGTTTCATCATAACTGTTGAGCTTGCTGCAGCACACAAGTCAGGGACGTAG 3378 46.15 MSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQANFEESGSSFDYSTSVRVTSTDVSPGQPPRSDKLTTAYLHHIQKGKLIQPFGCLLALHDKTFKVIAYSENAPEMLTTVTHAVPSMGDYPVLGIGTDVRAIFTAPSASALFKALSFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSIARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCRAKQVKVLQDEKLQFDLTLCGSTLRAAHSCHLQYMENMNSIASLVMAVVVNEGDEDGDPPPPSQQQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVSKELELENQILEKSILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYQSKIWRLGITPTDFQLQDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRISSNDVIFWFRSHTAAEVRWGGAKHEPSEKDDGRKMHPRTSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTLKNTDIIDSNRKSIQATLSDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLVNGWNTKIAELTGLPVDKAIGKHLLTLVEDSSLEIVKKMLFLALQGQEEQNVQFEIKTHGSHIEFGSISLLVNACASRDLRDDVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWKREEVVDKMLLGEVFGTHKACCRLKNQEAFVNLGVVLNNAMSGQDPEKISFGFSARSGMYVECILCVNKILDRDGAVTGVFCFLQLASQELQQALNIQRLCERTALKRLKTLGYMKRQIQNPLAGVVFSRKMLECTELVTRQQQLLQNSAHCQRQISKVLDESDLDKIIDGFIELEMVEFTLQEVLEVSISQVMIKSRGKSVQIVNEAAEEIMSETLYGDNLRLQQVLADFLVISVNYAPAGGQLTVSASLRKDQLGKSVHLVHLEFRITYAGGGIPEALLDEMFGNGEDASEEGFSMLISRKLVKLMNGDVRYLREAGKSSFIITVELAAAHKSGT 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 963123 967521 + evm.model.ptg000008l.1526 HCH8g0009 549107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0009 1125 Gene3D - 407 580 IPR043150 -
HCH8g0009 1125 SUPERFAMILY GAF domain-like 410 587 - -
HCH8g0009 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
HCH8g0009 1125 Pfam Phytochrome region 415 589 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1114 IPR036890 -
HCH8g0009 1125 SMART pas_2 620 686 IPR000014 -
HCH8g0009 1125 SMART pas_2 750 819 IPR000014 -
HCH8g0009 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
HCH8g0009 1125 Pfam PAS fold 70 186 IPR013654 GO:0006355(InterPro)
HCH8g0009 1125 PANTHER OS08G0260000 PROTEIN 1 995 - -
HCH8g0009 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1117 IPR003594 -
HCH8g0009 1125 Pfam PAS fold 621 735 IPR013767 GO:0006355(InterPro)
HCH8g0009 1125 Pfam PAS fold 751 873 IPR013767 GO:0006355(InterPro)
HCH8g0009 1125 SUPERFAMILY GAF domain-like 199 398 - -
HCH8g0009 1125 Pfam GAF domain 221 401 IPR003018 GO:0005515(InterPro)
HCH8g0009 1125 SMART HKATPase_4 1007 1119 IPR003594 -
HCH8g0009 1125 FunFam Phytochrome 614 745 - -
HCH8g0009 1125 PIRSF Phytochrome_conventional 1 1125 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
HCH8g0009 1125 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
HCH8g0009 1125 FunFam Phytochrome 407 538 - -
HCH8g0009 1125 Gene3D PAS domain 765 880 - -
HCH8g0009 1125 CDD HATPase_Phy-like 1006 1117 IPR044767 -
HCH8g0009 1125 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
HCH8g0009 1125 SMART gaf_1 219 412 IPR003018 GO:0005515(InterPro)
HCH8g0009 1125 CDD PAS 629 735 IPR000014 -
HCH8g0009 1125 Gene3D PAS domain 613 750 - -
HCH8g0009 1125 Gene3D - 932 1113 IPR036890 -
HCH8g0009 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
HCH8g0009 1125 CDD PAS 762 873 IPR000014 -
HCH8g0009 1125 Gene3D - 200 563 IPR029016 -
HCH8g0009 1125 MobiDBLite consensus disorder prediction 1 24 - -
HCH8g0009 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
HCH8g0009 1125 Gene3D PAS domain 75 322 - -
HCH8g0009 1125 ProSiteProfiles Histidine kinase domain profile. 902 1121 IPR005467 -
HCH8g0009 1125 NCBIfam PAS domain S-box protein 625 741 IPR000014 -
HCH8g0009 1125 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH8g0009 1125 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0347 HCH-Chr7:2483094 HCH8g0009 HCH-Chr8:963123 0.00E+00 dispersed
HCH7g1026 HCH-Chr7:41814062 HCH8g0009 HCH-Chr8:963123 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0009 K12120 - csv:101208491 1943.32