Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0012 ATGGGGATTAAGGGTTTAACGAAGCTATTAGCGGACAATGCACCCAAAGGGATGAAGGAGCAGAAATTCGAAACCTATTTCGGACGCAAAATCGCTATTGATGCTAGCATGAGCATCTATCAGTTTCTCATTGTTGTCGGAAGAAGTGGTACTGAGATGCTCACTAATGAAGCTGGAGAAGTCACCAGCCATTTGCAAGGCATGTTTAACCGTACTATTAGGCTTCTCGAAGCTGGAATTAAGCCTCTCTACGTCTTTGATGGGAAGCCTCCTGATTTGAAAAAACAAGAGCTTGCTAAACGTTACTCAAAGAGAGCTGATGCTACCCAAGACCTTGCTGATGCTGTTGAGGTTGGCAACAAGGAAGACATCGAGAAATTCAGTAAAAGGACTGTCAAGGTTACTAAGCAGCACAATGATGACTGTAAAAGACTCCTTCGACTCATGGGAGTGCCTGTCATTGAGGCACCTTCTGAAGCAGAGGCACAATGTGCTGCACTTGCCAAATTAGGCAAGGTTTATGCTGTTGCCTCAGAAGACATGGATTCTCTAACATTTGGTTCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAAATCCCAGTTATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTGAACCTTACCATGGATCAGTTCATTGATTTGTGCATTCTTTCTGGATGTGATTATTGTGATAGTATCCGAGGTATCGGGGGACAGACCGCTCTCAAGCTTATCCGTCAACATGGCTCAATAGAAAATATCTTAGAGAATATAAATAAAGAGAGGTACCAAATTCCAGATGATTGGCCTTATCAAGAGGCTCGCCAACTTTTTATAGAACCACTGGTGTGTACCGATGAGGAGCAGCTTGACATTAAGTGGACCGCACCAGATGAAGAAGGCTTGATAACATTTTTGGTAAATGAGAATGGGTTCAACAGTGATAGAGTGACGAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGTTAGAGTCATTTTTTAAGCCCTCAAATAGTTCTTCAGCATCAATTAAGCGAAAGGAGCCATCAGAAAAACCTACGAAACAAACAACTAAGAAGTCAAAGTCTGGTGGTGGTAGAAGAAAGTAG 1146 42.5 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPLYVFDGKPPDLKKQELAKRYSKRADATQDLADAVEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALAKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPDDWPYQEARQLFIEPLVCTDEEQLDIKWTAPDEEGLITFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRLESFFKPSNSSSASIKRKEPSEKPTKQTTKKSKSGGGRRK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 977726 984295 - evm.model.ptg000008l.1523 HCH8g0012 549110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0012 381 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
HCH8g0012 381 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
HCH8g0012 381 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
HCH8g0012 381 FunFam Flap endonuclease 1 219 286 - -
HCH8g0012 381 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 367 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
HCH8g0012 381 SMART 53exo3 29 372 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
HCH8g0012 381 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
HCH8g0012 381 FunFam Flap endonuclease 1 10 222 - -
HCH8g0012 381 CDD H3TH_FEN1-Euk 222 289 - -
HCH8g0012 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
HCH8g0012 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
HCH8g0012 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
HCH8g0012 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
HCH8g0012 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
HCH8g0012 381 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
HCH8g0012 381 MobiDBLite consensus disorder prediction 332 381 - -
HCH8g0012 381 Gene3D - 223 286 - -
HCH8g0012 381 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
HCH8g0012 381 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788(InterPro)
HCH8g0012 381 Gene3D - 10 222 - -
HCH8g0012 381 CDD PIN_FEN1 4 332 - -
HCH8g0012 381 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
HCH8g0012 381 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
HCH8g0012 381 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
HCH8g0012 381 MobiDBLite consensus disorder prediction 337 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0748 HCH-Chr3:5430081 HCH8g0012 HCH-Chr8:977726 4.40E-21 dispersed
HCH8g0012 HCH-Chr8:977726 HCH9g0160 HCH-Chr9:953428 4.30E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0012 K04799 - csv:101204273 672.159