Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0014 ATGAAGCTTTTTCTCCCAGTTGCATTTCCATTTTTAATATTAATACAACTTTCTTTTACTTTTACTTTTACCAAATGGGTTCATTGTTTTCACTTTCACTCTCTCTCTAATCTCACTCATTATGATTCTTCCTCCATTTTCGACGCTTATGAAGCTTCTTTCCCTCTTACTAACAATAATCCTCTCTTGGTTCCTCTCACTCTTATTCATGGAGCTGATGCTAAACAAGCAGTGTGTTTGGATGGCACTTTACCTGGATACCATTTGCATAGGGGATATGGCTCTGGAGCTAATAGCTGGCTTCTTCAATTGGAGGGAGGTGGGTGGTGTAACAATATCAGAAATTGTGTCTATCGCAAAAAAACTAGGCGTGGATCATCCATATATATGGAGAAGCAGTTACCATTTACAGGAATACTGAGCAATAAAGTTGAAGAAAATCCTGATTTTTTTAATTGGAATAGAGTAAAGCTCCGTTACTGTGACGGTGCCTCTTTTACTGGGGATTCTGAAAACAAGGCTGCCCAGTTGCAATTTAGAGGACAGCGGATCTGGTTGGCAGCAATGGAAGCATTGAGATCTGAGGGAATGCGTTTCGCAAAACAGGCTCTGCTTTCTGGCTGCTCTGCTGGAGGTTTGGCATCTATCATACATTGTGATGAGTTTCGAGACTTATTTCCAAGAACTACCAGAGTGAAATGTCTGAGTGATGCTGGATTATTTCTTGATGTGGCTGATATATCTGGGGGGCATGCTATTAGGAGCTTATTTGGTGGTGTTGTGGGCTTGCAGGGAGCGGGAAGGAACCTGCCGTACTTTTGCACCAACCACCTCGATCCAACTTCGTGTTTCTTCCCACAAAATTTAATTGCTGGTGTCAAAACCCCGCTGTTTCTCGTCAATGCAGCGTATGATTCATGGCAGATACAATCTAGTATAGCTCCACCTTCTCTGGATCCTGCTGGGTATTGGCATGATTGTAGGTTAAATCATGCAAAATGTACCCAACCTCAGATTCAATTTCTTCAAGGATTCAGGAATCAAATGTTAAATGTTGTGAAAGATTTCTCAAGATCTTACAAAAATGGGTTGTTTATAAATTCATGTTTTGCTCACTGCCAAACTGAGAGACAGGATACGTGGTTCGGTGACAATTCACCAGTCTTAGGAAACAAGCCAATTGCTCTGGCTGTTGGAGATTGGTATTTCGAGCGAGCATCCGTCAAGTCCATCGATTGCCCCTATCCATGCGATAGAACTTGCCACCATCTGGTTTTCAGAAGCGGCTAG 1290 42.09 MKLFLPVAFPFLILIQLSFTFTFTKWVHCFHFHSLSNLTHYDSSSIFDAYEASFPLTNNNPLLVPLTLIHGADAKQAVCLDGTLPGYHLHRGYGSGANSWLLQLEGGGWCNNIRNCVYRKKTRRGSSIYMEKQLPFTGILSNKVEENPDFFNWNRVKLRYCDGASFTGDSENKAAQLQFRGQRIWLAAMEALRSEGMRFAKQALLSGCSAGGLASIIHCDEFRDLFPRTTRVKCLSDAGLFLDVADISGGHAIRSLFGGVVGLQGAGRNLPYFCTNHLDPTSCFFPQNLIAGVKTPLFLVNAAYDSWQIQSSIAPPSLDPAGYWHDCRLNHAKCTQPQIQFLQGFRNQMLNVVKDFSRSYKNGLFINSCFAHCQTERQDTWFGDNSPVLGNKPIALAVGDWYFERASVKSIDCPYPCDRTCHHLVFRSG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 988028 991762 + evm.model.ptg000008l.1521 HCH8g0014 549112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0014 429 Pfam Pectinacetylesterase 58 406 IPR004963 GO:0016787(InterPro)
HCH8g0014 429 PANTHER NOTUM-RELATED 39 423 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1203 HCH-Chr1:59180259 HCH8g0014 HCH-Chr8:988028 3.30E-176 dispersed
HCH6g1305 HCH-Chr6:47221687 HCH8g0014 HCH-Chr8:988028 1.80E-123 dispersed
HCH8g0014 HCH-Chr8:988028 HCH9g0671 HCH-Chr9:4448625 1.60E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0014 K19882 - csv:101218273 766.148