Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0017 ATGACAAGGAAGAAGGTAAAACTTGCATACATCAGTAATGATTCTGCAAGAAAAGCAACATTCAAGAAAAGGAAGAGAGGTCTGATGAAGAAAGTGAGTGAACTCAGTACTCTATGTGGGATTGAGGCTTGTGCTATCATTTATAGTCCCTATGATTCTCAGCCTGAAGTTTGGCCTTCCCCTTTGGGAGTCCAAAGAGTTCTCTCTCAATTCAAGAAGATGCCTGAGATGGAACAAAGCAAGAAGATGGTTAACCAAGAGAGTTTCCTCAGGCAGAGAATTGCTAAAGCTAATGAACAACTCAAGAAACAGCGAAAGGATAACCGCGAAAAGGAGGTTACTCGTGTCATGTTCCAAAGCTTAACTGGAAAAGGCCTTCAAGGTTTCAACATCATAGATTTGAATGATCTTGGTTGGTTGATTGATCAAAACTTGAAGGATATTACAAAGAGGATGGAATCACTTAGAAAAGTAGTACTTGGTCAGAATCAGAATCGGAATCAGAACCCGAACCCGAACCAGAACCAAGCTCAAGTTGTGCCAATGCCATATGTGGAGGCTGATGGATTTAAAAATGCAGAAAATGTTGTGGAGATGGATCAGAAGATGGAGAATATGCAAAGGCAACCATGGTTCATGGAGTTGGTGAGCCCACAAGATCATCACATGGGCTTTGTTTCTGATGATATGCTTCTACCTTTTGCTGATCATAACCACAATGCAATGTGGTCCAATGCCTTCTTCCCTTGA 750 41.33 MTRKKVKLAYISNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIIYSPYDSQPEVWPSPLGVQRVLSQFKKMPEMEQSKKMVNQESFLRQRIAKANEQLKKQRKDNREKEVTRVMFQSLTGKGLQGFNIIDLNDLGWLIDQNLKDITKRMESLRKVVLGQNQNRNQNPNPNQNQAQVVPMPYVEADGFKNAENVVEMDQKMENMQRQPWFMELVSPQDHHMGFVSDDMLLPFADHNHNAMWSNAFFP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1021795 1022544 + evm.model.ptg000008l.1518 HCH8g0017 549115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0017 249 FunFam agamous-like MADS-box protein AGL80 13 97 - -
HCH8g0017 249 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
HCH8g0017 249 Gene3D - 13 115 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH8g0017 249 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH8g0017 249 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0005 HCH-Chr13:99343 HCH8g0017 HCH-Chr8:1021795 1.20E-22 dispersed
HCH5g0698 HCH-Chr5:5053400 HCH8g0017 HCH-Chr8:1021795 6.40E-108 dispersed
HCH8g0017 HCH-Chr8:1021795 HCH2g0254 HCH-Chr2:38619211 2.40E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33971 PF00319 SRF-TF 1.50E-18 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0017 - - - 0.0