Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0017 | ATGACAAGGAAGAAGGTAAAACTTGCATACATCAGTAATGATTCTGCAAGAAAAGCAACATTCAAGAAAAGGAAGAGAGGTCTGATGAAGAAAGTGAGTGAACTCAGTACTCTATGTGGGATTGAGGCTTGTGCTATCATTTATAGTCCCTATGATTCTCAGCCTGAAGTTTGGCCTTCCCCTTTGGGAGTCCAAAGAGTTCTCTCTCAATTCAAGAAGATGCCTGAGATGGAACAAAGCAAGAAGATGGTTAACCAAGAGAGTTTCCTCAGGCAGAGAATTGCTAAAGCTAATGAACAACTCAAGAAACAGCGAAAGGATAACCGCGAAAAGGAGGTTACTCGTGTCATGTTCCAAAGCTTAACTGGAAAAGGCCTTCAAGGTTTCAACATCATAGATTTGAATGATCTTGGTTGGTTGATTGATCAAAACTTGAAGGATATTACAAAGAGGATGGAATCACTTAGAAAAGTAGTACTTGGTCAGAATCAGAATCGGAATCAGAACCCGAACCCGAACCAGAACCAAGCTCAAGTTGTGCCAATGCCATATGTGGAGGCTGATGGATTTAAAAATGCAGAAAATGTTGTGGAGATGGATCAGAAGATGGAGAATATGCAAAGGCAACCATGGTTCATGGAGTTGGTGAGCCCACAAGATCATCACATGGGCTTTGTTTCTGATGATATGCTTCTACCTTTTGCTGATCATAACCACAATGCAATGTGGTCCAATGCCTTCTTCCCTTGA | 750 | 41.33 | MTRKKVKLAYISNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIIYSPYDSQPEVWPSPLGVQRVLSQFKKMPEMEQSKKMVNQESFLRQRIAKANEQLKKQRKDNREKEVTRVMFQSLTGKGLQGFNIIDLNDLGWLIDQNLKDITKRMESLRKVVLGQNQNRNQNPNPNQNQAQVVPMPYVEADGFKNAENVVEMDQKMENMQRQPWFMELVSPQDHHMGFVSDDMLLPFADHNHNAMWSNAFFP | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1021795 | 1022544 | + | evm.model.ptg000008l.1518 | HCH8g0017 | 549115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0017 | 249 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
HCH8g0017 | 249 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
HCH8g0017 | 249 | Gene3D | - | 13 | 115 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 201 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH8g0017 | 249 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH8g0017 | 249 | Coils | Coil | 87 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0005 | HCH-Chr13:99343 | HCH8g0017 | HCH-Chr8:1021795 | 1.20E-22 | dispersed | |
HCH5g0698 | HCH-Chr5:5053400 | HCH8g0017 | HCH-Chr8:1021795 | 6.40E-108 | dispersed | |
HCH8g0017 | HCH-Chr8:1021795 | HCH2g0254 | HCH-Chr2:38619211 | 2.40E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33971 | PF00319 | SRF-TF | 1.50E-18 | No_clan | HCH | TF |
Pathway information
