Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0020 ATGGATTATCGAGGTTATACCAATCTGAATAAAGGCTATAATGCTCAGGACCAGGAACCTCTTGCTGATGATTTTGTTGACGATTTTCGCTTGCCCATCAATCATAGACCAACTGAAAATGTTGATCTTGATAATGTCGAACAAGCTTCACTCGATACCCAATTAACTTCATCAAATGTCGGTTTTAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTTGGGAAGGATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATTAGGGATCCCAAGCTAGGAATCGGTAAACAAGAAGAAGATGACTTTTTTACTGCTGAAGAAAACATCCAGAGAAAAAAACTCGATGTTGAGATGGAGGAGTCTGAGGAAAATTCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAAGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAATAAACAATACAAATTGGCAATGGAATTTGAAGCTCATCTAAGTTCATATGATCACAATCATAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTACAAGCAGTCGAGATGATAGATACAAGCGGGAACAACAACGTCAAGAGAAAGAGATGGCAAAGTTTGCTCAAATTGCGGATGCCCGTAAGCAGCAGCAGTTGCAGGAGCAACAAGAAAAATCACCTAATGCTCCTGGTTCAACTGAACAAAGAAATGCTACTGTGCTTGCAGTTCAGGATCAGCGGAAAACGTTAAAATTTGGATTCTCTTCAAAAGGTGGCGCCTCAAAAAACATGTTGGGTAGTGCTGCAAAGGCAAAGAAACCGAAAGTAACAACTGTGGCTTCGGTTTTTGGCAATGATAGCGATGAGGAATCGTGA 891 40.29 MDYRGYTNLNKGYNAQDQEPLADDFVDDFRLPINHRPTENVDLDNVEQASLDTQLTSSNVGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRKKLDVEMEESEENSKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRYKREQQRQEKEMAKFAQIADARKQQQLQEQQEKSPNAPGSTEQRNATVLAVQDQRKTLKFGFSSKGGASKNMLGSAAKAKKPKVTTVASVFGNDSDEES 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1038682 1040903 + evm.model.ptg000008l.1515 HCH8g0020 549118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0020 296 MobiDBLite consensus disorder prediction 218 244 - -
HCH8g0020 296 ProSitePatterns Zinc finger C2H2 type domain signature. 154 176 IPR013087 -
HCH8g0020 296 MobiDBLite consensus disorder prediction 186 244 - -
HCH8g0020 296 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 14 295 - -
HCH8g0020 296 MobiDBLite consensus disorder prediction 258 296 - -
HCH8g0020 296 Coils Coil 107 127 - -
HCH8g0020 296 MobiDBLite consensus disorder prediction 186 214 - -
HCH8g0020 296 ProSiteProfiles G-patch domain profile. 57 102 IPR000467 GO:0003676(InterPro)
HCH8g0020 296 SMART G-patch_5 55 100 IPR000467 GO:0003676(InterPro)
HCH8g0020 296 Pfam G-patch domain 58 98 IPR000467 GO:0003676(InterPro)
HCH8g0020 296 SUPERFAMILY beta-beta-alpha zinc fingers 150 183 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0019 HCH-Chr8:1035527 HCH8g0020 HCH-Chr8:1038682 8.30E-50 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0020 - - - 0.0