Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0026 ATGGCCACCAATCTCAATACAGAACTGTCCAGGAAAACCAGTATTTTTGGTCTCATGGTATGGGAAGTGATTGGGATTGCCGTTGGGTTGTTTATCATAGTTATCCTCTCCGTGCTATCGTTATGTCTAATGTCACGGAAGAAATCGAGGAGAGCTAGGAACACAAGTAACCTGAGCCAAATCCCAACTGTCTCTAAGGAGATCAAGGAGGTGCGAGTGGAACAGGTATCGGCAAATGAATTCGTACCACGTGATGGAATACTTCTGACTATTCATGACAAGTCCAGTGATAAAGATACAGATAAAGTTTTAGTTCATCTTGGTATGGGAAAGGCAAAGAATGGAAACAATGGCAGTCAGTCAGGTTCGTTTCATCATTTAGATAAAGACGGTGGTGGATCTCAATCAGGGGAAGAAGGAAGTTCTGGCACAGTTACATTTTACAGGCCTTCATCTTCTTCTTCATATCCAATAACTGCTCCTTCCCCGCTTTCTGGTTTGCCTGAATTCTCTCACCTGGGTTGGGGTCACTGGTTTACATTAAGGGATCTTGAGCGTGCAACGAACCGGTTTTCTAAAGAAAATGTCCTTGGCGAAGGTGGGTATGGAGTTGTTTATCGGGGGTGTTTGATAAATGGAACTGAAGTGGCCGTTAAAAAAATTCTCAATAACCTGGGGCAAGCAGAGAAAGAATTCAGAGTGGAAGTTGAAGCTATTGGTCATGTGCGCCACAAGAATCTAGTTCGTCTTCTGGGATATTGCATAGAAGGGACTCATAGGATATTGGTGTATGAGTATGTGAACAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCATCAGCATGGATATCTCACTTGGGAAGCTCGGATGAAGATTCTTCTTGGCACAGCTAAAGCACTTGCTTACTTGCATGAGGCGATTGAGCCGAAAGTTGTACATCGTGACATTAAATCAAGCAATATATTGATTGATGATGAGTTCAATTCTAAGGTATCTGATTTCGGTCTAGCAAAGTTGCTTGGTGCGGGAAAAAGTTACGTCACAACACGAGTCATGGGCACCTTTGGTTATGTGGCCCCTGAGTATGCAAATACTGGTCTGTTGAATGAAAAGAGTGATGTCTACAGCTTTGGAATATTACTCTTAGAAGCAATCACTGGAAGAGATCCTGTGGACTATGGACGTCCCACGCAAGAGGTGAATCTTGTAGATTGGTTGAAAATGATGGTAGGAAGCAGGCGATCAGAAGAAGTGGTTGATCCAAATATTGAGACAAGGCCTTCAACGAGAGCCTTAAAGCGGTCCCTATTGACTGCTTTGAGGTGTGTTGATCCTGATTCTGAAAAGAGACCAAAGATGAGTCAAGTTGTCCGTATGCTCGAGTCTGAGGAATATCCTCTGCCACGAGAGGATCGAAGACACCGAAGAAATCAGGCAGGTAGCATGGAGATCGAATCACAGAGGGAAAATTCTGATACGGATCGGAGTGACAACCAAGTCTCGAGAACAGAAAGCCAACGTGACCAACAAATATAA 1542 43.64 MATNLNTELSRKTSIFGLMVWEVIGIAVGLFIIVILSVLSLCLMSRKKSRRARNTSNLSQIPTVSKEIKEVRVEQVSANEFVPRDGILLTIHDKSSDKDTDKVLVHLGMGKAKNGNNGSQSGSFHHLDKDGGGSQSGEEGSSGTVTFYRPSSSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLERATNRFSKENVLGEGGYGVVYRGCLINGTEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRILVYEYVNNGNLEQWLHGAMHQHGYLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNSKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGILLLEAITGRDPVDYGRPTQEVNLVDWLKMMVGSRRSEEVVDPNIETRPSTRALKRSLLTALRCVDPDSEKRPKMSQVVRMLESEEYPLPREDRRHRRNQAGSMEIESQRENSDTDRSDNQVSRTESQRDQQI 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1079082 1082384 + evm.model.ptg000008l.1509 HCH8g0026 549124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0026 513 PANTHER OS01G0323000 PROTEIN 1 497 IPR052232 -
HCH8g0026 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0026 513 SMART serkin_6 191 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0026 513 MobiDBLite consensus disorder prediction 109 148 - -
HCH8g0026 513 Pfam Protein kinase domain 192 460 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0026 513 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
HCH8g0026 513 SUPERFAMILY Protein kinase-like (PK-like) 175 471 IPR011009 -
HCH8g0026 513 Gene3D Transferase(Phosphotransferase) domain 1 267 478 - -
HCH8g0026 513 MobiDBLite consensus disorder prediction 445 513 - -
HCH8g0026 513 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524(InterPro)
HCH8g0026 513 FunFam Putative receptor-like serine/threonine-protein kinase 267 478 - -
HCH8g0026 513 CDD STKc_IRAK 197 463 - -
HCH8g0026 513 ProSiteProfiles Protein kinase domain profile. 191 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0026 513 FunFam Putative receptor-like protein kinase 173 266 - -
HCH8g0026 513 Coils Coil 211 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0908 HCH-Chr2:52568230 HCH8g0026 HCH-Chr8:1079082 1.60E-182 dispersed
HCH7g0046 HCH-Chr7:325328 HCH8g0026 HCH-Chr8:1079082 9.60E-178 dispersed
HCH7g1646 HCH-Chr7:48561545 HCH8g0026 HCH-Chr8:1079082 9.80E-135 dispersed
HCH8g0026 HCH-Chr8:1079082 HCH8g0750 HCH-Chr8:44129632 3.60E-76 dispersed
HCH10g0958 HCH-Chr10:14908058 HCH8g0026 HCH-Chr8:1079082 2.00E-179 wgd
HCH6g1782 HCH-Chr6:50169291 HCH8g0026 HCH-Chr8:1079082 5.90E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81672 PF00069 Pkinase 6.40E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0026 - - - 0.0