Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0032 ATGGCAGGAGGTGGTGGTGATGTTATGCCATTATTGGTTATGGTTGTTGTCCAATTTCTATATGCAGGATTGAACATTGTATCAAAGCTAGCTCTGGATTCTGGTATGAACCCACTTGTTCTTGTTGCTTACAGGCAGCTGTTTGCTACCATTTCCATAGCTCCTTTTGCTTTTTGGATAGAGAGAAAAGAGAGACCCAAGATTACCAAATCTATCCTATTTCAGATTTTTCTGTGTTCCTTAACTGGGGCAACAGCAAACCAGGTTTTTTTCTTTGTTGGGCTAAAATATTCAAGTCCCACAATTGCATGTGCATTGACCAATATACTCCCAGCTGCAACTTTTATCCTTGCTGTTCTTTTCAGACAAGAATCTGTGAGCATCAAGACAAGGGCAGGTGGAGCTAAAGTAATGGGGACTGTGGCGTGTGTTGGTGGAGCGATGCTGCTATCATTCTATCATGGAAAAACCATAGAGTTGAGCAAATCTAGGTTTGTTTGGACGTATGCTGAGAGAATGAGCGGCCAAAGTTTATCCAGTAGCCATGGTAGCAGTATCTCTATCTGGGGTTCTCTTTTCTTAATCATCAGCTGTCTTGCTTGGGCGGCTTGGTTTGTAATCCAAGCAAAAGTGAATGAGAAGTATCCAGTTCCGTACACAAGCACAGCAATCATGAGTTTGATGGCAACTATTGAATGTGGAGCAATCGCCATAGGTGTTGAGCACAAGTCTTTTGAAGCTTGGTCTTTGAAAGCTACAATCAGGCTTCTTGGAGCTCTCTATTCGGGAGTTGCTTGCTCTGGGATTGGATTTTGCCTGACCTCATGGAGTATTCAAAAGAAGGGTCCTCTCTATGCTTCAGTTTTCAGCCCACTTTTGCTTATTATCGTCGCTATTTTCAGTTATCTCTTCCTCCAAGAAAAATTATACGTTGGAACAGTTGTTGGATCATTGTTGATTGTTGGTGGGCTATATGGTGTTGTGTGGGGGAAGACAAAAGAGGTGAAATTGCAATTACGTGAATTTGAAATGGCATCAGCAGCAGCAACGAAGGGACAACATGATCGTCAAGAGTGTAATGACTTGGAATTTCAGTCGTATAATCTGCGCTTTCAAAACCCAATCGTAAAGTTATAG 1137 42.04 MAGGGGDVMPLLVMVVVQFLYAGLNIVSKLALDSGMNPLVLVAYRQLFATISIAPFAFWIERKERPKITKSILFQIFLCSLTGATANQVFFFVGLKYSSPTIACALTNILPAATFILAVLFRQESVSIKTRAGGAKVMGTVACVGGAMLLSFYHGKTIELSKSRFVWTYAERMSGQSLSSSHGSSISIWGSLFLIISCLAWAAWFVIQAKVNEKYPVPYTSTAIMSLMATIECGAIAIGVEHKSFEAWSLKATIRLLGALYSGVACSGIGFCLTSWSIQKKGPLYASVFSPLLLIIVAIFSYLFLQEKLYVGTVVGSLLIVGGLYGVVWGKTKEVKLQLREFEMASAAATKGQHDRQECNDLEFQSYNLRFQNPIVKL 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1159736 1162614 + evm.model.ptg000008l.1503 HCH8g0032 549130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0032 378 Pfam EamA-like transporter family 11 149 IPR000620 GO:0016020(InterPro)
HCH8g0032 378 Pfam EamA-like transporter family 189 328 IPR000620 GO:0016020(InterPro)
HCH8g0032 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 144 - -
HCH8g0032 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 332 - -
HCH8g0032 378 PANTHER WAT1-RELATED PROTEIN 12 346 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1810 HCH-Chr4:43449137 HCH8g0032 HCH-Chr8:1159736 3.80E-67 dispersed
HCH4g1812 HCH-Chr4:43769725 HCH8g0032 HCH-Chr8:1159736 1.80E-72 dispersed
HCH5g0609 HCH-Chr5:4260825 HCH8g0032 HCH-Chr8:1159736 3.80E-61 dispersed
HCH8g0032 HCH-Chr8:1159736 HCH9g1265 HCH-Chr9:36718999 6.90E-69 dispersed
HCH8g0032 HCH-Chr8:1159736 HCH8g0033 HCH-Chr8:1313879 2.00E-60 tandem
HCH10g0949 HCH-Chr10:14123680 HCH8g0032 HCH-Chr8:1159736 1.80E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0032 - - - 0.0