Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0054 ATGGTTTGCGAGGAGGAGCCAATATTGGTACAAAAAGTTTGTGATTTATACGATGAACTCTCAAACCTCGAAAGCCTCAAACCTTGTAAACATGTCGACATGCTTTTCACACAACTTGTTCAGACATGCATGTCTTCTACTGATCCTCAGTTTGATGTCCAAAACCTCTCCAAAAGAGTTCAAGAAATTAGATCAAAACTCATTCATCTTTGTGGTCTTGCAGAAGGCCTTTTAGAGAGTCATTTCTCTGATATCTTAGCCTCTTTTCAAAACCCAATTCTTCATCTTAACATCTTCCCTTATTACAAAAATTATCTTAAACTTAGTCTCCTCGAATTCAACATCCTTAACCGATACTGTCTCCAAGAACCAAATAAAATTGCCTTTCTGGGATCTGGTCCTCTTCCTCTCACATCAATTGTTTTGGCCACAAATCATCTCACTTCTACCATTTTTCACAATTATGATCTTGACCCAGTTGCCAATTTGAAGGCTTTTAACTTGATCTCTCTCCATCCTGATCTGTCAAAGAGAATGTTTTTCCATAGCAATGATGTTTTGAGTGTTGGTGATGAGTTGAAGGAGTACGAGGTTGTTTTTTTAGCAGCTTTAGTGGGAATGGAAAAGGAAGAGAAACTGAGAGTCATCGATCATTTGTCTAAGTTCATGTCTGAAGGAGCTTATCTGATGTTGAGGAGTGCTCATGGTGCTAGGGCTTTTCTTTATCCTGTGGTTGAGCCTTGTGATTTGGTAGGGTTTGAAGTTCTTTCTGTGTATCATCCTACTGATGAAGTTATCAACTCTGTCATCATTGCAAGGAAGGTATTTGATGATCATAAGCAAGAGTTAATTAATGCGAATAATATGAATAATAATAATGTTGTGCCTAACAAGTGTTCTGAGATTCAGGCTTTCAATATTCCACTGATAAAGAATGGGAATATGATTGAGAAATTTGCTGTGGAAGAGTAA 972 37.45 MVCEEEPILVQKVCDLYDELSNLESLKPCKHVDMLFTQLVQTCMSSTDPQFDVQNLSKRVQEIRSKLIHLCGLAEGLLESHFSDILASFQNPILHLNIFPYYKNYLKLSLLEFNILNRYCLQEPNKIAFLGSGPLPLTSIVLATNHLTSTIFHNYDLDPVANLKAFNLISLHPDLSKRMFFHSNDVLSVGDELKEYEVVFLAALVGMEKEEKLRVIDHLSKFMSEGAYLMLRSAHGARAFLYPVVEPCDLVGFEVLSVYHPTDEVINSVIIARKVFDDHKQELINANNMNNNNVVPNKCSEIQAFNIPLIKNGNMIEKFAVEE 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2965696 2966667 - evm.model.ptg000008l.1481 HCH8g0054 549152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0054 323 Gene3D Vaccinia Virus protein VP39 8 276 IPR029063 -
HCH8g0054 323 Pfam Nicotianamine synthase protein 6 275 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH8g0054 323 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 279 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH8g0054 323 PANTHER NICOTIANAMINE SYNTHASE 3 6 287 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0927 HCH-Chr10:12293431 HCH8g0054 HCH-Chr8:2965696 6.20E-106 dispersed
HCH8g0054 HCH-Chr8:2965696 HCH8g1022 HCH-Chr8:46226998 7.20E-75 dispersed
HCH10g0926 HCH-Chr10:12181963 HCH8g0054 HCH-Chr8:2965696 7.00E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0054 K05953 - gmx:100794250 424.091