Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0081 ATGTCAAGAATGGCTTTGGCCATTTATCTTTTTATATTCATCTTGGTTCCTTCATTACAAGCTTCCTCCATTGATGTTATCTACCCAAAGGAACAAAATGCAACTCTGCAGGCCATGATTGCCCGGGTCTGTGCAGATATTGAAGATCGAAATTCATGCTTTGCAAACATACAGCTTGAGCTCGAACGGAGTGTTTCCTCACATCGGGATTCAGCCTTGAGTGCCGCACTTAGAGCAACTCTTAATGAAGCAAGACGAGCCATAGAATCCATAACAAAATTCACCACGTTCTCGTTTAGTTACCGCGAACAACTTGCAATTGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTATCGGAGCTTGCATGGTCATTAGCCGAGATGAAAAGGATTCGTGCTGGCGAAGATGAAGCTTCTTACCAAGGGAACTTAAAAGCATGGTTGAGTGCTGCACTTAGCAACCAAGACACATGCCTCGAAGGTTTTGAGGGCACAGACAGGCACCTTGAAAGTTTTATTAGAGGAAGTTTAAAACAAGTTACACAACTCATTAGCAATGTCTTGTCTTTGTACTCTCAATTACACAGCTTACCTTTTCAACCACCTCGGAATCAAACAGCTGGAAATACAAGCTCTGAGTTTCCAGATTGGATGACAGATAGCGAGCGGGAGCTCGTGAAATCTCATCCACATAGTGCGCATGTTGATGCAGTTGTGGCTTTGGATGGAAGCGGAGACTACCGTTCGATCAATGAAGCGGTAATTGCAGCTCCAAACTATAGTAACAGAAGGTACATCATTTATGTGAAGAAGGGAGTTTACAAAGAGAATATAGATATGAAGAGAAAGAAAACCAACATTATGTTTGTAGGGGATGGTATTGGAAAGACAGTGGTGACAGGAAACCGCAATTTCTTGCAAGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTTTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCGGAAAACCATCAGGCAGTGGCACTCCGAGCCGACTCCGACCAATCAGCATTCTACCGGTGCAGTTTTGAGGGCCATCAAGACACACTCTATGTCCACTCTCTGCGCCAGTTTTACAGGGAATGCAATATCTACGGCACCATAGACTACATCTTTGGCAATGGTGCTGCAGTCTTCCAAAAATGCAACATCTACACCCGAGTTCCCCTCCCTCTCCAGAAGGTCACCATCACCGCGCAAGGCCGAAAATCCCCACATCAAAGTACTGGTTTTTCAATCCAAGACAGCTTCATTTATGCAACTCAGCCAACTTATCTAGGCAGGCCTTGGAAGCTGTATTCCAGGACAGTCTTCTTGAATACTTACATGAGTGGTCTGGTACAACCAAGAGGGTGGCTTGAATGGTATGGCAATTTTGCTTTAGGCTCATTGTGGTATGGAGAGTACAAGAACTATGGACCGGGTGCATCCCTATCTGGGCGGGTCAGGTGGCCGGGATACCATATTATCCAAAACGCCGCCGATGCTAGGTTCTTCACCTCTGAGCATTTCATCGACGGCCGATCATGGTTGCCGAGGACGGGTGTCAAGTTCACATATGGTTTGAGTAACTGA 1623 45.66 MSRMALAIYLFIFILVPSLQASSIDVIYPKEQNATLQAMIARVCADIEDRNSCFANIQLELERSVSSHRDSALSAALRATLNEARRAIESITKFTTFSFSYREQLAIEDCKELLDFSVSELAWSLAEMKRIRAGEDEASYQGNLKAWLSAALSNQDTCLEGFEGTDRHLESFIRGSLKQVTQLISNVLSLYSQLHSLPFQPPRNQTAGNTSSEFPDWMTDSERELVKSHPHSAHVDAVVALDGSGDYRSINEAVIAAPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFVGDGIGKTVVTGNRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRADSDQSAFYRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGSLWYGEYKNYGPGASLSGRVRWPGYHIIQNAADARFFTSEHFIDGRSWLPRTGVKFTYGLSN 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3954616 3956508 + evm.model.ptg000008l.1454 HCH8g0081 549179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0081 540 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857(InterPro)
HCH8g0081 540 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
HCH8g0081 540 Pfam Pectinesterase 236 523 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH8g0081 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 195 IPR035513 -
HCH8g0081 540 SUPERFAMILY Pectin lyase-like 234 537 IPR011050 -
HCH8g0081 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 195 IPR035513 -
HCH8g0081 540 ProSitePatterns Pectinesterase signature 1. 261 280 IPR018040 -
HCH8g0081 540 SMART PMEI_2 35 190 IPR006501 GO:0004857(InterPro)
HCH8g0081 540 Gene3D - 231 538 IPR012334 -
HCH8g0081 540 PANTHER PECTINESTERASE 10 529 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH8g0081 540 NCBIfam pectinesterase inhibitor domain 4 195 IPR006501 GO:0004857(InterPro)
HCH8g0081 540 FunFam Pectinesterase 230 538 - -
HCH8g0081 540 CDD PMEI-like_4 52 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0172 HCH-Chr1:13467443 HCH8g0081 HCH-Chr8:3954616 3.50E-132 dispersed
HCH7g1526 HCH-Chr7:47791557 HCH8g0081 HCH-Chr8:3954616 5.20E-112 dispersed
HCH7g1528 HCH-Chr7:47810322 HCH8g0081 HCH-Chr8:3954616 1.60E-105 dispersed
HCH8g0081 HCH-Chr8:3954616 HCH8g0695 HCH-Chr8:43665010 2.80E-47 dispersed
HCH8g0081 HCH-Chr8:3954616 HCH8g0082 HCH-Chr8:3958147 2.40E-99 tandem
HCH4g1042 HCH-Chr4:6698670 HCH8g0081 HCH-Chr8:3954616 2.10E-122 wgd
HCH6g1710 HCH-Chr6:49794629 HCH8g0081 HCH-Chr8:3954616 3.60E-101 wgd
HCH7g1060 HCH-Chr7:42694465 HCH8g0081 HCH-Chr8:3954616 3.80E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0081 K01051 - csv:101202977 950.273