Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0082 ATGGGGTATGGAGATGAAGATACCCAAAAGAAGAAGAGATTCGCCATTATCGGCGTCTCCTCCATGTTACTCGTTGCGATGGTCGTTGCCGTGACCGTTGGCGTCAACTTGAACCAAAATGATGCTAGTGATCCGGCCACCGGAAGCAAATCACGTGAGATATCCGCCTCCATGAAAGCCATTAAAGCCGTTTGTCAACCCACAGATTTCAAAGCAGAATGTATCAACAGCCTAAAGGCCACCGCAGGCAACTCCACCGATCCGAAAGAACTCGTTCAAGCCGGCTTCAAAGCCGCAGTTAATTACCTTCAAGAGGCTGCTAAGAAATCAACCACCTTAAGAGAGCTTGAGAAGGATCCAAGGGCCGTTAAAGCCTTAGCTGGTTGTAAAGAGTTGATGGATTTTGCCATTGATGAACTCAAGTACTCGTTCAATAAATTAGGAGAATTCGATATCACGAAACTCGACGAAATGCTGATTGATTTAAAGATATGGCTAAGTGCCACCATTACTTATCAAGAAACATGCTTAGATGGCTTCGAAAACACAACAGGAAACGCGGCGGAGAAGATGAAGAAGGCTTTGAAGACATCCATGAGATTGAGTAGTAATGGTCTAGCTATGGTTTCTGAGATATCATCCATGCTAATGGATCTTCAAATTCCCGGGATCAGCCGCCGTCTCCTTTCGCAGGATATTCCGGTGCTCGGACACGATGATTACACCGAGTGGGCGTTGAATCCCGGCGTGAGGAGACTCCTCCATGCTTCTGCAGCTAAGATTAAACCTAATGCTGTGGTGGCTAAGGATGGAAGTGGACAGTTTAAGACTATCCATGATGCACTCCTTAAGGTTCCAAAGAATAATAATAAGACTTTTGTTATTTATATCAAACAAGGAATCTACCATGAACATGTTTTGCTTAACAAATCTATGACCCATGTCATGTTCATTGGAGATGGTCCTAAAAAGACTAGGATCTCTGGAAACAAGAACTTTGTTGATGGCACACCCACCTTCAAAACTGCAACTGTTGCTATAACAGCAGAGCACTTCATAGCAAAAGACATTGGATTTGAAAACACAGCAGGTCCTGAGAAGCATCAAGCTGTAGCACTAAGAGTTCAAGCAGATAAGGCCATCTTCTACAACTGTGACATGGATGCCTACCAAGACACTCTCTACGTCCACACCAAGCGTCAATACTACCGCGACTGCACGATCTCCGGCACGATCGACTTCGTCTTTGGCGACGCAGCTGCCGTGTTTCAAAACTGCACATTCTTAGTCAGGAAGCCTTTAGATAATCAACAAAACATCGTCACCGCACACGGTAGGAAAGAAAAACGGCAACCATCAGCACTTATCCTCCAGGGTTGTAGTATCAAAGCACACCCCGATCTCTACCCCGTAAGGAAACAGTTCAGAACCTACCTTGGAAGGCCATGGAAGGAGTATTCAAGAACAATCATCATGGACTCATTCATTGATGATTTGATTCAACCAGAAGGGTGGCTTCCATGGATGGGAGATTGGGGTCTAAAAACATGTTTCTACACAGAATTCAACAACTATGGACCTGGTTCAAACAAGGCAAAGAGAGTTAAATGGAGAGGAATCAAGACAATAACACCAAAGCATGCAGTAGATTTCACAGCAGGAAGGTTTGTATGGGGAGATACCTGGATTAAGCCCACAGGAGTTCCATATATCTCCGGGATGGTGAAGGCTAATTCCGGTGCCGGTGCCGGTGCCGCTAAGAAAGCACATTGA 1773 45.12 MGYGDEDTQKKKRFAIIGVSSMLLVAMVVAVTVGVNLNQNDASDPATGSKSREISASMKAIKAVCQPTDFKAECINSLKATAGNSTDPKELVQAGFKAAVNYLQEAAKKSTTLRELEKDPRAVKALAGCKELMDFAIDELKYSFNKLGEFDITKLDEMLIDLKIWLSATITYQETCLDGFENTTGNAAEKMKKALKTSMRLSSNGLAMVSEISSMLMDLQIPGISRRLLSQDIPVLGHDDYTEWALNPGVRRLLHASAAKIKPNAVVAKDGSGQFKTIHDALLKVPKNNNKTFVIYIKQGIYHEHVLLNKSMTHVMFIGDGPKKTRISGNKNFVDGTPTFKTATVAITAEHFIAKDIGFENTAGPEKHQAVALRVQADKAIFYNCDMDAYQDTLYVHTKRQYYRDCTISGTIDFVFGDAAAVFQNCTFLVRKPLDNQQNIVTAHGRKEKRQPSALILQGCSIKAHPDLYPVRKQFRTYLGRPWKEYSRTIIMDSFIDDLIQPEGWLPWMGDWGLKTCFYTEFNNYGPGSNKAKRVKWRGIKTITPKHAVDFTAGRFVWGDTWIKPTGVPYISGMVKANSGAGAGAAKKAH 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3958147 3960081 + evm.model.ptg000008l.1453 HCH8g0082 549180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0082 590 CDD PMEI-like_3 63 214 - -
HCH8g0082 590 PANTHER PECTINESTERASE 13 565 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH8g0082 590 FunFam Pectinesterase 258 574 - -
HCH8g0082 590 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
HCH8g0082 590 NCBIfam pectinesterase inhibitor domain 54 210 IPR006501 GO:0004857(InterPro)
HCH8g0082 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
HCH8g0082 590 FunFam Pectinesterase 57 213 - -
HCH8g0082 590 SUPERFAMILY Pectin lyase-like 261 573 IPR011050 -
HCH8g0082 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
HCH8g0082 590 Gene3D - 257 574 IPR012334 -
HCH8g0082 590 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
HCH8g0082 590 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857(InterPro)
HCH8g0082 590 Coils Coil 99 119 - -
HCH8g0082 590 Pfam Pectinesterase 264 560 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1060 HCH-Chr7:42694465 HCH8g0082 HCH-Chr8:3958147 6.90E-198 dispersed
HCH7g1061 HCH-Chr7:42705628 HCH8g0082 HCH-Chr8:3958147 3.20E-195 dispersed
HCH8g0082 HCH-Chr8:3958147 HCH8g0572 HCH-Chr8:42533040 2.00E-43 dispersed
HCH8g0081 HCH-Chr8:3954616 HCH8g0082 HCH-Chr8:3958147 2.40E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0082 K01051 - csv:101207393 927.161