Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0107 ATGGGTTGTGTTTGGAAATGCGTTTTCATGATTTCTATCATCATGTCTTTGTCTTTGTCAGCACAAAACACACATATTTTCATTGATGATAATGATGATGATGACTCCATGTTTAATGCAGCAGAAGAATTCAATGTTGATAGTAAGAATGAATTTAAGAAAGTCTCAGGGGAAGATGAGAGTGAAGGGAAGCAAGATTTCATTCTGGAAAAGGTCAGAGTTCTACTAGGACTAAAGAGTTTACCAATGGAAAATCAAAGGCCATTGGATGATCTTTCGCCGTCGCCTTCTCCGTTACACGCCGGCATTGGTGCTGAGGCTCCTATTGCAGCTCCTGCAGTGCACATGCATGAGCATTCTCACCCGCACCGCCTTCGCCTGCATAAGAGCCGAGCGGCTTACAAGCCTCGGAGAAAAGATGGAAGAGAAGGAAGAATTACAAGGATTCTTGTTGCAGTTCTTGTGTCTGTAGGAGCTACCATTTTGATATGTGCTTTTGCTGCGTTTTGGATGTGGAGGAAATTCAGAAGTCAAAAAGAGAAACCAACAAAGACAATCTGTGTAATGAGTAAAACAGAAGTGAAGGCTGCTGCAACTCCAAGATCAAAATGTGTTACTTCTCAAAATTCAGAAAGCAAGGGCAGCTCAAAATCTGGTCTTGATCTCTTTGATCTCAGTTTGATTGGAATTGGTGTTGAAGAAGAGACTTCTGGTGTGAAGCAAACTTCTCCAAGTGTGAGAGAGTTTTCGATTCGGAAAGAGGCGGAATTGGACCGAGAAATGTCGGATTCGGATTCGGATTCAGATGGTGATAATGTAAGTGTTTCTTCAACCAAGGAAAGGATGCATGCTCATGATGTAGATGAGAGAAAATCAATACAATGTGAATCTAAACGAGCTGATTCTTCATCTAGGGAAAGAGTTGTCATTCCTGTTAGATCTTATTCATCTGATGATGAATCATTCCATTCTTGTGGAGATTCGAATTTGTCGAATCTTCGCCTTTCCAATGTTTCAGATTCTTCTGCTAATGTGATAACAAATTCTACTCGTTCAATTCCAACTGTGAACTTAGTACCATCCCAATATGATGAATCTAACACATCTTTAACTTCTCAGATGCACCTTACCCTTCCTGCAAGTAATGCCGAACCAAAAATTTCGACCGTTTCGAATTCTGCAGATTGCCAAAAGAATGTCCCATCTCTACCTTCTCCTCCACCTCCTCCTCCTCCTCCTCCTCCGCCACCACCGCCGCCTCGGTCTCATCCAACCCCTTATGTACTTCATAGCTCCTTTTCCTTATCTTCACCTTTTTCAACTAGAGAAGAAACTGGATCTACCTCCTCTTCCGCATGGTTAAAATCATCATCACCTGCAATGTCAGATTCTTCTTCAGGACTATCACCATGGAATGATCTTCCATCACCTCAAAATGCTGCTAAACCTTCACAATTACCATCTTCTATTCCTCCACCCCCTTGCCCACCACCATGTTTGAAAACAAACAATTACTCTTTTAAAACTCCACCTCCTCCCCCTTCCAAGATCCCTCAATTTATGGCATTTGGAAAAGACGAGAATTCACGGCCGAAACTAAAGCCTCTCCACTGGGACAAAGTTAGAGCTGCACCGGATCGATCAATGGTATGGGACAAGCTAAGATGGAGCTCATTTGAGCTAAACGAAGAAATGATCGAGTCGCTTTTCGGCTACAATCAACAAGATTCATTGAAGAATGGTGATAATAGCAACAAAAGCCCTTCTCCAAGCAAGCATATACTTGAGCCAAAGAGACTTCAAAACCTAACTATATTGTTCAAAGCTCTGAATGTATCTACAGACCAAGTCTGTGAAGCAATAGAACAAGGGACAGGATTGCGTTTACGACAACTTGAAGCGCTCGTGCAGATGGTACCGACCCAGGAAGAAGAGACCAAATTATTAAGCTATGAAGGAGACATCAGTGAACTGGGTTCGACAGAGAAGTTTGTCATGGCAATTCTCAGAATACCATATTCTTTCCAACGAGTTGAGGCCATGCTTTATAGAGAAACTTTTGAAGATGAGGTGAATCATCTTCGAAATTCGTTTTCGATGCTAGAGGAAGCCTGCAAGGAACTGAAATCTAGCAGACTGTTCTTGAAACTACTAGAAGCTGTGTTAAAAACAGGAAACAGAATGAATGTTGGCACAAGTAGAGGAGGAGCTAGAGCATTCAAACTAGATGCCCTCTTAAAGCTTTCTGACGTGAAAGGAACTGATGGAAAAACTTCCTTACTCCATTTTGTTGTCCAAGAAATGATAAGATCAGAAGGTATAAGAGTTTCAGGAAGCATTATGGGAAAGATAAGCCAGAAAAACAAACCAAGAACCAATGAAGAAAGAGAAAATGATTACAAAAGAATGGGATTGGATCTTGTTTCTGGTCTAAGCACTGAGCTTTATAATGTAAAGAGATCATCAACTATTGATCTGAATGTTCTTGCAAGCTCTACAGCAAATCTAACAGAGGGAATTATGAAGCTTCAAAAACTGGTTTGTAATGATTTGTCAGTGGATGAAAAGAGTGAGAATTTCATTGTTTCTATGAAATCCTTCTTGATTTATGTGAAGAAGACGATGGAGGAATTGAAAAAAGATGAAGAAAAGGTGATGTCTTGTGTGAAAGAAATCACTGAATATTTTCATGGGAATGTAAGCAAAGAGGAAACAAACCCACTTAGGATTTTTGTCATTGTTAGAGATTTTCTTGGAATGTTGGATAATGTCTGTAAGAGCTTCAAGATAGCAACTTGA 2799 40.48 MGCVWKCVFMISIIMSLSLSAQNTHIFIDDNDDDDSMFNAAEEFNVDSKNEFKKVSGEDESEGKQDFILEKVRVLLGLKSLPMENQRPLDDLSPSPSPLHAGIGAEAPIAAPAVHMHEHSHPHRLRLHKSRAAYKPRRKDGREGRITRILVAVLVSVGATILICAFAAFWMWRKFRSQKEKPTKTICVMSKTEVKAAATPRSKCVTSQNSESKGSSKSGLDLFDLSLIGIGVEEETSGVKQTSPSVREFSIRKEAELDREMSDSDSDSDGDNVSVSSTKERMHAHDVDERKSIQCESKRADSSSRERVVIPVRSYSSDDESFHSCGDSNLSNLRLSNVSDSSANVITNSTRSIPTVNLVPSQYDESNTSLTSQMHLTLPASNAEPKISTVSNSADCQKNVPSLPSPPPPPPPPPPPPPPPRSHPTPYVLHSSFSLSSPFSTREETGSTSSSAWLKSSSPAMSDSSSGLSPWNDLPSPQNAAKPSQLPSSIPPPPCPPPCLKTNNYSFKTPPPPPSKIPQFMAFGKDENSRPKLKPLHWDKVRAAPDRSMVWDKLRWSSFELNEEMIESLFGYNQQDSLKNGDNSNKSPSPSKHILEPKRLQNLTILFKALNVSTDQVCEAIEQGTGLRLRQLEALVQMVPTQEEETKLLSYEGDISELGSTEKFVMAILRIPYSFQRVEAMLYRETFEDEVNHLRNSFSMLEEACKELKSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKISQKNKPRTNEERENDYKRMGLDLVSGLSTELYNVKRSSTIDLNVLASSTANLTEGIMKLQKLVCNDLSVDEKSENFIVSMKSFLIYVKKTMEELKKDEEKVMSCVKEITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIAT 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4309375 4312846 + evm.model.ptg000008l.1428 HCH8g0107 549205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0107 932 Gene3D Formin, FH2 domain 520 930 IPR042201 -
HCH8g0107 932 SMART it6_source 523 930 IPR015425 -
HCH8g0107 932 MobiDBLite consensus disorder prediction 486 500 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 198 218 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 201 218 - -
HCH8g0107 932 Pfam Formin Homology 2 Domain 525 921 IPR015425 -
HCH8g0107 932 SUPERFAMILY Formin homology 2 domain (FH2 domain) 536 927 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 256 305 - -
HCH8g0107 932 ProSiteProfiles Formin homology-2 (FH2) domain profile. 523 932 IPR015425 -
HCH8g0107 932 MobiDBLite consensus disorder prediction 274 305 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 427 485 - -
HCH8g0107 932 PANTHER FORMIN-RELATED 86 928 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH8g0107 932 Coils Coil 684 704 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 389 531 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 401 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0214 HCH-Chr5:1215988 HCH8g0107 HCH-Chr8:4309375 2.10E-104 dispersed
HCH8g0107 HCH-Chr8:4309375 HCH2g0759 HCH-Chr2:51235032 3.50E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0107 K28090 - csv:101208374 1057.36