Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0107 ATGGGTTGTGTTTGGAAATGCGTTTTCATGATTTCTATCATCATGTCTTTGTCTTTGTCAGCACAAAACACACATATTTTCATTGATGATAATGATGATGATGACTCCATGTTTAATGCAGCAGAAGAATTCAATGTTGATAGTAAGAATGAATTTAAGAAAGTCTCAGGGGAAGATGAGAGTGAAGGGAAGCAAGATTTCATTCTGGAAAAGGTCAGAGTTCTACTAGGACTAAAGAGTTTACCAATGGAAAATCAAAGGCCATTGGATGATCTTTCGCCGTCGCCTTCTCCGTTACACGCCGGCATTGGTGCTGAGGCTCCTATTGCAGCTCCTGCAGTGCACATGCATGAGCATTCTCACCCGCACCGCCTTCGCCTGCATAAGAGCCGAGCGGCTTACAAGCCTCGGAGAAAAGATGGAAGAGAAGGAAGAATTACAAGGATTCTTGTTGCAGTTCTTGTGTCTGTAGGAGCTACCATTTTGATATGTGCTTTTGCTGCGTTTTGGATGTGGAGGAAATTCAGAAGTCAAAAAGAGAAACCAACAAAGACAATCTGTGTAATGAGTAAAACAGAAGTGAAGGCTGCTGCAACTCCAAGATCAAAATGTGTTACTTCTCAAAATTCAGAAAGCAAGGGCAGCTCAAAATCTGGTCTTGATCTCTTTGATCTCAGTTTGATTGGAATTGGTGTTGAAGAAGAGACTTCTGGTGTGAAGCAAACTTCTCCAAGTGTGAGAGAGTTTTCGATTCGGAAAGAGGCGGAATTGGACCGAGAAATGTCGGATTCGGATTCGGATTCAGATGGTGATAATGTAAGTGTTTCTTCAACCAAGGAAAGGATGCATGCTCATGATGTAGATGAGAGAAAATCAATACAATGTGAATCTAAACGAGCTGATTCTTCATCTAGGGAAAGAGTTGTCATTCCTGTTAGATCTTATTCATCTGATGATGAATCATTCCATTCTTGTGGAGATTCGAATTTGTCGAATCTTCGCCTTTCCAATGTTTCAGATTCTTCTGCTAATGTGATAACAAATTCTACTCGTTCAATTCCAACTGTGAACTTAGTACCATCCCAATATGATGAATCTAACACATCTTTAACTTCTCAGATGCACCTTACCCTTCCTGCAAGTAATGCCGAACCAAAAATTTCGACCGTTTCGAATTCTGCAGATTGCCAAAAGAATGTCCCATCTCTACCTTCTCCTCCACCTCCTCCTCCTCCTCCTCCTCCGCCACCACCGCCGCCTCGGTCTCATCCAACCCCTTATGTACTTCATAGCTCCTTTTCCTTATCTTCACCTTTTTCAACTAGAGAAGAAACTGGATCTACCTCCTCTTCCGCATGGTTAAAATCATCATCACCTGCAATGTCAGATTCTTCTTCAGGACTATCACCATGGAATGATCTTCCATCACCTCAAAATGCTGCTAAACCTTCACAATTACCATCTTCTATTCCTCCACCCCCTTGCCCACCACCATGTTTGAAAACAAACAATTACTCTTTTAAAACTCCACCTCCTCCCCCTTCCAAGATCCCTCAATTTATGGCATTTGGAAAAGACGAGAATTCACGGCCGAAACTAAAGCCTCTCCACTGGGACAAAGTTAGAGCTGCACCGGATCGATCAATGGTATGGGACAAGCTAAGATGGAGCTCATTTGAGCTAAACGAAGAAATGATCGAGTCGCTTTTCGGCTACAATCAACAAGATTCATTGAAGAATGGTGATAATAGCAACAAAAGCCCTTCTCCAAGCAAGCATATACTTGAGCCAAAGAGACTTCAAAACCTAACTATATTGTTCAAAGCTCTGAATGTATCTACAGACCAAGTCTGTGAAGCAATAGAACAAGGGACAGGATTGCGTTTACGACAACTTGAAGCGCTCGTGCAGATGGTACCGACCCAGGAAGAAGAGACCAAATTATTAAGCTATGAAGGAGACATCAGTGAACTGGGTTCGACAGAGAAGTTTGTCATGGCAATTCTCAGAATACCATATTCTTTCCAACGAGTTGAGGCCATGCTTTATAGAGAAACTTTTGAAGATGAGGTGAATCATCTTCGAAATTCGTTTTCGATGCTAGAGGAAGCCTGCAAGGAACTGAAATCTAGCAGACTGTTCTTGAAACTACTAGAAGCTGTGTTAAAAACAGGAAACAGAATGAATGTTGGCACAAGTAGAGGAGGAGCTAGAGCATTCAAACTAGATGCCCTCTTAAAGCTTTCTGACGTGAAAGGAACTGATGGAAAAACTTCCTTACTCCATTTTGTTGTCCAAGAAATGATAAGATCAGAAGGTATAAGAGTTTCAGGAAGCATTATGGGAAAGATAAGCCAGAAAAACAAACCAAGAACCAATGAAGAAAGAGAAAATGATTACAAAAGAATGGGATTGGATCTTGTTTCTGGTCTAAGCACTGAGCTTTATAATGTAAAGAGATCATCAACTATTGATCTGAATGTTCTTGCAAGCTCTACAGCAAATCTAACAGAGGGAATTATGAAGCTTCAAAAACTGGTTTGTAATGATTTGTCAGTGGATGAAAAGAGTGAGAATTTCATTGTTTCTATGAAATCCTTCTTGATTTATGTGAAGAAGACGATGGAGGAATTGAAAAAAGATGAAGAAAAGGTGATGTCTTGTGTGAAAGAAATCACTGAATATTTTCATGGGAATGTAAGCAAAGAGGAAACAAACCCACTTAGGATTTTTGTCATTGTTAGAGATTTTCTTGGAATGTTGGATAATGTCTGTAAGAGCTTCAAGATAGCAACTTGA 2799 40.48 MGCVWKCVFMISIIMSLSLSAQNTHIFIDDNDDDDSMFNAAEEFNVDSKNEFKKVSGEDESEGKQDFILEKVRVLLGLKSLPMENQRPLDDLSPSPSPLHAGIGAEAPIAAPAVHMHEHSHPHRLRLHKSRAAYKPRRKDGREGRITRILVAVLVSVGATILICAFAAFWMWRKFRSQKEKPTKTICVMSKTEVKAAATPRSKCVTSQNSESKGSSKSGLDLFDLSLIGIGVEEETSGVKQTSPSVREFSIRKEAELDREMSDSDSDSDGDNVSVSSTKERMHAHDVDERKSIQCESKRADSSSRERVVIPVRSYSSDDESFHSCGDSNLSNLRLSNVSDSSANVITNSTRSIPTVNLVPSQYDESNTSLTSQMHLTLPASNAEPKISTVSNSADCQKNVPSLPSPPPPPPPPPPPPPPPRSHPTPYVLHSSFSLSSPFSTREETGSTSSSAWLKSSSPAMSDSSSGLSPWNDLPSPQNAAKPSQLPSSIPPPPCPPPCLKTNNYSFKTPPPPPSKIPQFMAFGKDENSRPKLKPLHWDKVRAAPDRSMVWDKLRWSSFELNEEMIESLFGYNQQDSLKNGDNSNKSPSPSKHILEPKRLQNLTILFKALNVSTDQVCEAIEQGTGLRLRQLEALVQMVPTQEEETKLLSYEGDISELGSTEKFVMAILRIPYSFQRVEAMLYRETFEDEVNHLRNSFSMLEEACKELKSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKISQKNKPRTNEERENDYKRMGLDLVSGLSTELYNVKRSSTIDLNVLASSTANLTEGIMKLQKLVCNDLSVDEKSENFIVSMKSFLIYVKKTMEELKKDEEKVMSCVKEITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIAT 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4309375 4312846 + evm.model.ptg000008l.1428 HCH8g0107 549205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0107 932 Gene3D Formin, FH2 domain 520 930 IPR042201 -
HCH8g0107 932 SMART it6_source 523 930 IPR015425 -
HCH8g0107 932 MobiDBLite consensus disorder prediction 486 500 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 198 218 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 201 218 - -
HCH8g0107 932 Pfam Formin Homology 2 Domain 525 921 IPR015425 -
HCH8g0107 932 SUPERFAMILY Formin homology 2 domain (FH2 domain) 536 927 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 256 305 - -
HCH8g0107 932 ProSiteProfiles Formin homology-2 (FH2) domain profile. 523 932 IPR015425 -
HCH8g0107 932 MobiDBLite consensus disorder prediction 274 305 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 427 485 - -
HCH8g0107 932 PANTHER FORMIN-RELATED 86 928 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH8g0107 932 Coils Coil 684 704 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 389 531 - -
HCH8g0107 932 MobiDBLite consensus disorder prediction 401 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0107 K28090 - - csv:101208374 1057.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0214 HCH-Chr5:1215988 HCH8g0107 HCH-Chr8:4309375 2.10E-104 dispersed
HCH8g0107 HCH-Chr8:4309375 HCH2g0759 HCH-Chr2:51235032 3.50E-98 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0214 . 190 1011 FH2 protein (formin) Gene Family AT3G25500 53.1 1.9e-196 683.3
HCH1g0118 . 420 891 FH2 protein (formin) Gene Family AT3G25500 65.3 6.6e-162 568.5
HCH2g0022 . 429 864 FH2 protein (formin) Gene Family AT3G25500 60.4 3.6e-139 493.0
HCH8g0107 . 526 927 FH2 protein (formin) Gene Family AT3G25500 50.8 1.7e-104 377.9
HCH5g0214 . 537 1030 FH2 protein (formin) Gene Family AT2G43800 57.5 9.1e-144 508.1
HCH2g0022 . 441 880 FH2 protein (formin) Gene Family AT2G43800 54.7 7.2e-125 445.3
HCH2g0759 . 221 558 FH2 protein (formin) Gene Family AT4G15200 53.5 7.0e-63 238.4
HCH12g1149 . 479 629 FH2 protein (formin) Gene Family AT4G15200 63.8 2.0e-49 193.7
HCH2g0759 . 419 878 FH2 protein (formin) Gene Family AT5G54650 66.7 2.2e-166 583.2
HCH5g0214 . 585 986 FH2 protein (formin) Gene Family AT5G54650 50.8 3.0e-102 370.2
HCH2g0022 . 27 884 FH2 protein (formin) Gene Family AT5G67470 54.5 4.0e-208 721.8
HCH1g0118 . 442 910 FH2 protein (formin) Gene Family AT5G67470 58.7 6.6e-134 475.3
HCH5g0214 . 589 1030 FH2 protein (formin) Gene Family AT5G67470 60.7 3.6e-132 469.5
HCH1g0992 . 334 810 FH2 protein (formin) Gene Family AT1G59910 50.2 2.1e-119 427.2
HCH4g1640 . 271 666 FH2 protein (formin) Gene Family AT1G59910 50.5 3.0e-105 380.2
HCH1g0992 . 135 806 FH2 protein (formin) Gene Family AT1G70140 51.2 6.1e-141 498.4
HCH2g0022 . 429 840 FH2 protein (formin) Gene Family AT3G05470 50.2 1.3e-105 381.3
HCH5g0222 . 943 1254 FH2 protein (formin) Gene Family AT1G42980 50.8 4.2e-69 258.5
HCH5g0222 . 1 1261 FH2 protein (formin) Gene Family AT1G31810 66.2 0.0e+00 1221.8
HCH8g1276 . 1311 1632 FH2 protein (formin) Gene Family AT5G07650 75.5 4.6e-131 465.7
HCH12g0414 . 1089 1410 FH2 protein (formin) Gene Family AT5G07650 64.6 2.4e-111 400.2
HCH8g0927 . 840 1159 FH2 protein (formin) Gene Family AT5G07650 62.0 8.4e-109 391.7
HCH5g0222 . 927 1258 FH2 protein (formin) Gene Family AT5G07650 59.6 4.6e-107 386.0
HCH8g1276 . 1238 1625 FH2 protein (formin) Gene Family AT5G07770 69.4 6.2e-141 498.0
HCH12g0414 . 1013 1403 FH2 protein (formin) Gene Family AT5G07770 58.9 5.1e-119 425.2
HCH5g0222 . 863 1252 FH2 protein (formin) Gene Family AT5G07770 56.3 2.6e-115 412.9
HCH8g0927 . 763 1151 FH2 protein (formin) Gene Family AT5G07770 56.1 4.5e-115 412.1
HCH12g0414 . 1005 1410 FH2 protein (formin) Gene Family AT3G32400 77.8 5.2e-173 604.4
HCH8g0927 . 770 1160 FH2 protein (formin) Gene Family AT3G32400 68.9 1.3e-147 520.0
HCH5g0222 . 863 1257 FH2 protein (formin) Gene Family AT3G32400 65.5 1.4e-141 500.0
HCH8g1276 . 1238 1632 FH2 protein (formin) Gene Family AT3G32400 64.7 2.0e-140 496.1
HCH12g0414 . 1 1410 FH2 protein (formin) Gene Family AT2G25050 51.6 0.0e+00 1153.7
HCH8g0927 . 1 1160 FH2 protein (formin) Gene Family AT2G25050 53.5 7.4e-295 1010.4
HCH8g1275 . 1 378 FH2 protein (formin) Gene Family AT2G25050 57.5 1.6e-124 444.5
HCH8g1276 . 1239 1632 FH2 protein (formin) Gene Family AT5G07780 63.0 2.7e-123 439.1
HCH12g0414 . 1014 1404 FH2 protein (formin) Gene Family AT5G07780 54.8 4.3e-105 378.6
HCH8g0927 . 770 1159 FH2 protein (formin) Gene Family AT5G07780 53.3 1.3e-101 367.1
HCH5g0222 . 864 1253 FH2 protein (formin) Gene Family AT5G07780 52.2 1.1e-100 364.0
HCH8g1276 . 1 1641 FH2 protein (formin) Gene Family AT5G07740 62.7 0.0e+00 1124.4
HCH8g1275 . 1 416 FH2 protein (formin) Gene Family AT5G07740 68.3 8.4e-164 575.5
HCH8g1276 . 1310 1639 FH2 protein (formin) Gene Family AT5G07760 74.7 8.0e-129 458.4
HCH12g0414 . 1088 1410 FH2 protein (formin) Gene Family AT5G07760 65.4 3.4e-111 399.8
HCH8g0927 . 839 1159 FH2 protein (formin) Gene Family AT5G07760 64.1 6.4e-110 395.6
HCH5g0222 . 937 1258 FH2 protein (formin) Gene Family AT5G07760 60.7 2.8e-105 380.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37