Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0108 ATGAAGGCATTGGCAATGACAATGGCATTTGTTCTTCTGTTCGTTTCAGGGTTCATGTTTCGTTTAGCAATAGCAGCTGATGATTCAACTAAGCTTGGAACCGTGATTGGAATCGATCTTGGTACTACTTATTCATGTGTTGGTGTTTACAAGAATGGTCACGTAGAAATTATAGCAAACGATCAAGGTAACAGGATCACGCCCTCGTGGGTTGGATTCACTGATACAGAGCGTCTGATCGGAGAAGCTGCTAAGAATCAAGCGGCTCTTAACGCCGAACGGACTATTTTCGACGTTAAGCGTCTCATAGGGAGAAAGTTTAATGATCCAGAAGTACAGAGAGATATCAAGTTTTTACCCTATAAGATTGTGAATAAGGATGGGAAACCGTATATACAAGTGAAAGTTAAAGGTGAAAGCAAGGTATTTAGCCCTGAAGAAATCAGTGCTATGATACTGACAAAGATGAAGGAGACGGCTGAATCTTACTTGGGCAAGAAAATAAAGGATGCCGTTGTAACCGTCCCAGCTTACTTCAATGATGCACAGAGGCAGGCCACTAAGGATGCAGGTATCATCGCTGGGCTCAATGTGGCACGGATAATCAACGAGCCGACGGCAGCTGCGATCGCCTATGGTTTGGACAAGAAAGGAGGAGAGAAGAACATTCTGGTATATGACCTTGGTGGTGGTACATTTGATGTTAGCATCTTGACCATTGATAATGGTGTGTTTGAGGTTCTTGCTACTAGTGGGGATACACATTTGGGAGGTGAGGATTTTGACCACAGAGTGATGGACTATTTCATCAAGTTGATCAAGAAGAAGTACAATAAAGACGTTAGTAAGGACAACAAAGCTCTCGGCAAGCTTCGTAGGGAGTGTGAGAGGGCTAAAAGAGCTTTGAGTAACCAGCACCAAGTCAGAGTTGAGATTGAGTCCCTTTTCGATGGTGTCGATTTCTCGGAGCCATTGACGAGGGCACGGTTCGAGGAATTGAACGTGGATTTGTTTAAGAAGACTATGGGGCCAGTAAAGAAGGCTTTGGAAGATGCAGGACTACAGAAAAGTGATATCCATGAGATTGTTCTTGTTGGAGGAAGCACTAGAATCCCCAAGGTGCAGCAGCTGTTGAAAGACTTCTTTGATGGAAAAGAGCCAAACAAGGGTGTCAATCCCGACGAAGCTGTTGCTTATGGTGCGGCAGTTCAGGGTGGTATTCTTAGCGGTGAAGGTGGCGAGGAGACGAAAAGCATTCTGTTATTGGATGTTGCCCCTTTGAGTTTGGGAATTGAAACAGTTGGGGGAGTGATGACCAAGTTGATCCCAAGGAATACTGTCATTCCCACCAAAAAGTCCCAGATTTTCTCCACTTACCAAGATAACCAATCCACAGTCTCTATCAAGGCATATGAAGGTGAAAGAAGCTTGACTAAGGATTGTCGCGAACTCGGGAGATTTGACCTCTCCGGTATTCCACCTGCACCAAGGGGAGTACCTCAGATTGAGGTTACGTTCGAGGTCGACGCCAATGGCATCCTCCATGTTATGGCAGAGGACAAGGCGGCACAGAAGTCACAATCGATCACCATCACAAACGATAAAGGGCGGCTCAGCCAAGAAGAGATTGACAAAATGGTGAAGGAGGCTGAAGAGTTTGCTGAGGAAGATAAGAAGGTGAGGGAGAAAATCGATTCCCGGAACAAGTTAGAGAGCTATATATACAGCATGAGGAGCAGCATTGAAGAGAAGGACAAGCTCGCAGACAAGATGGATAATGAGAATAAGGAAAAGATTGAAAGCACGTTGAAGGAAGCTCTTGAATGGTTGGATGATAATCAAAATGCAGAGAAGGAAGATTTTGATGAGAAGCTGAAAGAAGTTGAAGAAGTATGCAATTCAATCATCAAACAAGTATATGAGAAGAGTGGGGTAAGTTCTTCTGGTTCAGAAGACGAGGAACCAAATGATGAATTATAG 1980 44.29 MKALAMTMAFVLLFVSGFMFRLAIAADDSTKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDTERLIGEAAKNQAALNAERTIFDVKRLIGRKFNDPEVQRDIKFLPYKIVNKDGKPYIQVKVKGESKVFSPEEISAMILTKMKETAESYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDVSKDNKALGKLRRECERAKRALSNQHQVRVEIESLFDGVDFSEPLTRARFEELNVDLFKKTMGPVKKALEDAGLQKSDIHEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGEETKSILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQIFSTYQDNQSTVSIKAYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVDANGILHVMAEDKAAQKSQSITITNDKGRLSQEEIDKMVKEAEEFAEEDKKVREKIDSRNKLESYIYSMRSSIEEKDKLADKMDNENKEKIESTLKEALEWLDDNQNAEKEDFDEKLKEVEEVCNSIIKQVYEKSGVSSSGSEDEEPNDEL 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4325933 4329366 + evm.model.ptg000008l.1427 HCH8g0108 549206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0108 659 FunFam Heat shock 70 kDa 413 567 - -
HCH8g0108 659 FunFam heat shock 70 kDa protein-like 97 151 - -
HCH8g0108 659 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 414 571 IPR029047 -
HCH8g0108 659 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 413 567 IPR029047 -
HCH8g0108 659 Gene3D - 568 641 IPR029048 -
HCH8g0108 659 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 565 645 IPR029048 -
HCH8g0108 659 Pfam Hsp70 protein 35 641 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
HCH8g0108 659 SUPERFAMILY Actin-like ATPase domain 33 216 IPR043129 -
HCH8g0108 659 ProSitePatterns Heat shock hsp70 proteins family signature 2. 225 238 IPR018181 -
HCH8g0108 659 FunFam Heat shock 70 kDa protein 334 388 - -
HCH8g0108 659 SUPERFAMILY Actin-like ATPase domain 219 410 IPR043129 -
HCH8g0108 659 PANTHER HEAT SHOCK PROTEIN 70KDA 35 605 IPR013126 GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005788(PANTHER)|GO:0016020(PANTHER)|GO:0030433(PANTHER)|GO:0030968(PANTHER)|GO:0034663(PANTHER)|GO:0140662(InterPro)
HCH8g0108 659 FunFam Heat shock protein 70 36 227 - -
HCH8g0108 659 Coils Coil 599 638 - -
HCH8g0108 659 Gene3D - 36 406 - -
HCH8g0108 659 ProSitePatterns Heat shock hsp70 proteins family signature 1. 38 45 IPR018181 -
HCH8g0108 659 CDD HSPA5-like_NBD 33 406 IPR042050 -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 418 437 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 62 74 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 171 191 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 359 375 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 499 515 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 34 47 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 84 92 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 391 411 - -
HCH8g0108 659 PRINTS 70kDa heat shock protein signature 231 241 - -
HCH8g0108 659 FunFam Heat shock 70 kDa 257 340 - -
HCH8g0108 659 ProSitePatterns Heat shock hsp70 proteins family signature 3. 362 376 IPR018181 -
HCH8g0108 659 Gene3D - 217 391 - -
HCH8g0108 659 Gene3D Actin; Chain A, domain 4 257 340 - -
HCH8g0108 659 Coils Coil 577 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1375 HCH-Chr4:10055520 HCH8g0108 HCH-Chr8:4325933 1.50E-76 dispersed
HCH6g1173 HCH-Chr6:46205040 HCH8g0108 HCH-Chr8:4325933 2.40E-290 dispersed
HCH8g0108 HCH-Chr8:4325933 HCH9g0659 HCH-Chr9:4384754 7.00E-226 dispersed
HCH8g0108 HCH-Chr8:4325933 HCH13g0471 HCH-Chr13:3261085 1.40E-226 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0108 K09490 - mdm:103450916 1139.79