Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0110 ATGGCAAGAAATCGTTTTGTGTGTGAAATATGCAACAAGGGGTTCCAAAGAGACCAAAACCTGCACCTTCACAGGCGAGGTCACAATCTGCCATGGAAATTGAAGCAGAGAATGAGTGGAAGTGAGTTGAAAAGACGAGTTTACGTATGCCCAGAGCCCTCCTGCGTTCATCACTGCCCAGGAAGAGCTCTTGGGGACCTCACAGGCATCAAGAAACATTTCAGCAGAAAGCATGGCGAGAAGAAGTGGAAATATGATAAATGTTCTAAAAAGTATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACTTGTGGCTCTAAAGAATACAAATGTGACTGTGGCACACTCTTTTCCAGAGAGACAGCTTCATTACTCACAGAGCCTTCTGTGATGCCTTAA 402 44.03 MARNRFVCEICNKGFQRDQNLHLHRRGHNLPWKLKQRMSGSELKRRVYVCPEPSCVHHCPGRALGDLTGIKKHFSRKHGEKKWKYDKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTLFSRETASLLTEPSVMP 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4749274 4751808 - evm.model.ptg000008l.1425 HCH8g0110 549208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0110 133 Gene3D Classic Zinc Finger 45 128 - -
HCH8g0110 133 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 121 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH8g0110 133 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
HCH8g0110 133 Gene3D Classic Zinc Finger 6 44 - -
HCH8g0110 133 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
HCH8g0110 133 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 82 106 - -
HCH8g0110 133 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 44 78 - -
HCH8g0110 133 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0110 HCH-Chr8:4749274 HCH9g0599 HCH-Chr9:4017327 3.60E-57 dispersed
HCH8g0110 HCH-Chr8:4749274 HCH8g0112 HCH-Chr8:4797189 7.10E-69 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33975 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0110 - - - 0.0