Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0112 ATGTCCAATATCTCAGGAAGTACTGATGGTGGGAGCTTTATCCATGGAAGCTCCAAGTCACCATCTTCTTCAACTCTCACAGCAAACAGCCATGGATCACTCTCCCAAACTCATGCACCTCCCAAGAAGAAAAGAAACTTACCAGGGACACCAGATCCAAATGCAGAAGTGATAGCTCTATCACCAGAAACCCTAATGGCAAGAAATCGTTTTGTGTGTGAAATATGCAACAAGGGGTTCCAAAGAGACCAAAACCTGCAACTTCACAGGCGAGGTCACAATCTGCCATGGAAATTGAAGCAGAGAATGAGTGGAAGTGAGTTGAAAAGACGAGTTTACGTATGCCCAGAGCCCTCCTGCGTTCATCACTGCCCAGGAAGAGCTCTTGGGGACCTCACAGGCATCAAGAAACATTTCAGCAGAAAGCATGGCGAGAAGAAGTGGAAATGTGATAAATGCTCTAAAAAGTATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACTTGTGGCTCTAAAGAATACAAATGTGACTGTGGCACACTCTTTTCCAGGAGAGACAGCTTCATTACTCACAGAGCCTTCTGTGATGCCTTAACAGAAGAAAGCAACAAAGTACATCAAGGAGGGGTTTTGGGTTCCAACATAGAATCTAACTTACAAACACAACTCCCTGAAATTTTAATCAACAAGATTAATCCAAACTCATTGCCTGGATTTTCAGATTCTAAAACCCCATTAACTCTTCCTCATGATCTCATGCCAATACCTCCCAAATCCTTAAACCTAAGCAGCAACGGCAACATTAGCCTTCCATTTATCACCTCATCAAGCCTCATGTCTGCCACAGCATTGCTTCAAAAAGCAGCTCAAATGGGAGCATCTGTGAGCAATGGTGCCGCTTCTACTACTTGTATGAACTCTCCCATGATCCATAAGGGCTTTGTTACAACAATGGCTCCTTCTTCATTTGGTGGGTTGATTCCCCAAAACTTTCCCACTACTTATATGCAAGAAAACGCTTCAAATGGCGGGCTTGTCGGCTTGGAAACGATCGACGATATTTCTCTGTTGAACGGGATATTTGAGCAGCCGCATCCGGACGCAGCAAGGAAGAAAATAGAAAGCGAAAATGGAGAAGATCATGGGAGGTTTTTTATGAATGGTAGAAAGTCCAGTTTAGGATTAATGAGTAGTGGGGATACTATGACACTGGATTTATTGGGGACTGAAGGACCAAAATTACCAAGAAACTTTCAGGAGCAGACGCAAGAAGGAATTGGTTTTGAAGGGTTTATGGAAAATATGAATTACTTTAGATAG 1323 42.93 MSNISGSTDGGSFIHGSSKSPSSSTLTANSHGSLSQTHAPPKKKRNLPGTPDPNAEVIALSPETLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRMSGSELKRRVYVCPEPSCVHHCPGRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTLFSRRDSFITHRAFCDALTEESNKVHQGGVLGSNIESNLQTQLPEILINKINPNSLPGFSDSKTPLTLPHDLMPIPPKSLNLSSNGNISLPFITSSSLMSATALLQKAAQMGASVSNGAASTTCMNSPMIHKGFVTTMAPSSFGGLIPQNFPTTYMQENASNGGLVGLETIDDISLLNGIFEQPHPDAARKKIESENGEDHGRFFMNGRKSSLGLMSSGDTMTLDLLGTEGPKLPRNFQEQTQEGIGFEGFMENMNYFR 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4797189 4804253 - evm.model.ptg000008l.1423 HCH8g0112 549210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0112 440 SMART c2h2final6 113 143 IPR013087 -
HCH8g0112 440 SMART c2h2final6 71 93 IPR013087 -
HCH8g0112 440 SMART c2h2final6 148 168 IPR013087 -
HCH8g0112 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 417 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH8g0112 440 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 109 143 - -
HCH8g0112 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
HCH8g0112 440 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
HCH8g0112 440 MobiDBLite consensus disorder prediction 1 40 - -
HCH8g0112 440 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
HCH8g0112 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
HCH8g0112 440 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 174 209 - -
HCH8g0112 440 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
HCH8g0112 440 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
HCH8g0112 440 MobiDBLite consensus disorder prediction 1 56 - -
HCH8g0112 440 FunFam protein indeterminate-domain 12-like 50 119 - -
HCH8g0112 440 Gene3D Classic Zinc Finger 105 196 - -
HCH8g0112 440 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 147 171 - -
HCH8g0112 440 Gene3D Classic Zinc Finger 70 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0112 HCH-Chr8:4797189 HCH9g0599 HCH-Chr9:4017327 1.10E-81 dispersed
HCH8g0110 HCH-Chr8:4749274 HCH8g0112 HCH-Chr8:4797189 7.10E-69 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33976 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0112 - - - 0.0