Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0112 | ATGTCCAATATCTCAGGAAGTACTGATGGTGGGAGCTTTATCCATGGAAGCTCCAAGTCACCATCTTCTTCAACTCTCACAGCAAACAGCCATGGATCACTCTCCCAAACTCATGCACCTCCCAAGAAGAAAAGAAACTTACCAGGGACACCAGATCCAAATGCAGAAGTGATAGCTCTATCACCAGAAACCCTAATGGCAAGAAATCGTTTTGTGTGTGAAATATGCAACAAGGGGTTCCAAAGAGACCAAAACCTGCAACTTCACAGGCGAGGTCACAATCTGCCATGGAAATTGAAGCAGAGAATGAGTGGAAGTGAGTTGAAAAGACGAGTTTACGTATGCCCAGAGCCCTCCTGCGTTCATCACTGCCCAGGAAGAGCTCTTGGGGACCTCACAGGCATCAAGAAACATTTCAGCAGAAAGCATGGCGAGAAGAAGTGGAAATGTGATAAATGCTCTAAAAAGTATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACTTGTGGCTCTAAAGAATACAAATGTGACTGTGGCACACTCTTTTCCAGGAGAGACAGCTTCATTACTCACAGAGCCTTCTGTGATGCCTTAACAGAAGAAAGCAACAAAGTACATCAAGGAGGGGTTTTGGGTTCCAACATAGAATCTAACTTACAAACACAACTCCCTGAAATTTTAATCAACAAGATTAATCCAAACTCATTGCCTGGATTTTCAGATTCTAAAACCCCATTAACTCTTCCTCATGATCTCATGCCAATACCTCCCAAATCCTTAAACCTAAGCAGCAACGGCAACATTAGCCTTCCATTTATCACCTCATCAAGCCTCATGTCTGCCACAGCATTGCTTCAAAAAGCAGCTCAAATGGGAGCATCTGTGAGCAATGGTGCCGCTTCTACTACTTGTATGAACTCTCCCATGATCCATAAGGGCTTTGTTACAACAATGGCTCCTTCTTCATTTGGTGGGTTGATTCCCCAAAACTTTCCCACTACTTATATGCAAGAAAACGCTTCAAATGGCGGGCTTGTCGGCTTGGAAACGATCGACGATATTTCTCTGTTGAACGGGATATTTGAGCAGCCGCATCCGGACGCAGCAAGGAAGAAAATAGAAAGCGAAAATGGAGAAGATCATGGGAGGTTTTTTATGAATGGTAGAAAGTCCAGTTTAGGATTAATGAGTAGTGGGGATACTATGACACTGGATTTATTGGGGACTGAAGGACCAAAATTACCAAGAAACTTTCAGGAGCAGACGCAAGAAGGAATTGGTTTTGAAGGGTTTATGGAAAATATGAATTACTTTAGATAG | 1323 | 42.93 | MSNISGSTDGGSFIHGSSKSPSSSTLTANSHGSLSQTHAPPKKKRNLPGTPDPNAEVIALSPETLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRMSGSELKRRVYVCPEPSCVHHCPGRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTLFSRRDSFITHRAFCDALTEESNKVHQGGVLGSNIESNLQTQLPEILINKINPNSLPGFSDSKTPLTLPHDLMPIPPKSLNLSSNGNISLPFITSSSLMSATALLQKAAQMGASVSNGAASTTCMNSPMIHKGFVTTMAPSSFGGLIPQNFPTTYMQENASNGGLVGLETIDDISLLNGIFEQPHPDAARKKIESENGEDHGRFFMNGRKSSLGLMSSGDTMTLDLLGTEGPKLPRNFQEQTQEGIGFEGFMENMNYFR | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4797189 | 4804253 | - | evm.model.ptg000008l.1423 | HCH8g0112 | 549210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0112 | 440 | SMART | c2h2final6 | 113 | 143 | IPR013087 | - | |
HCH8g0112 | 440 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
HCH8g0112 | 440 | SMART | c2h2final6 | 148 | 168 | IPR013087 | - | |
HCH8g0112 | 440 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 29 | 417 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH8g0112 | 440 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 109 | 143 | - | - | |
HCH8g0112 | 440 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 148 | 176 | IPR013087 | - | |
HCH8g0112 | 440 | SUPERFAMILY | beta-beta-alpha zinc fingers | 70 | 168 | IPR036236 | - | |
HCH8g0112 | 440 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
HCH8g0112 | 440 | Pfam | Zinc finger, C2H2 type | 71 | 93 | IPR013087 | - | |
HCH8g0112 | 440 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 93 | IPR013087 | - | |
HCH8g0112 | 440 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 174 | 209 | - | - | |
HCH8g0112 | 440 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - | |
HCH8g0112 | 440 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 126 | 205 | - | - | |
HCH8g0112 | 440 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
HCH8g0112 | 440 | FunFam | protein indeterminate-domain 12-like | 50 | 119 | - | - | |
HCH8g0112 | 440 | Gene3D | Classic Zinc Finger | 105 | 196 | - | - | |
HCH8g0112 | 440 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 147 | 171 | - | - | |
HCH8g0112 | 440 | Gene3D | Classic Zinc Finger | 70 | 94 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH8g0112 | HCH-Chr8:4797189 | HCH9g0599 | HCH-Chr9:4017327 | 1.10E-81 | dispersed | |
HCH8g0110 | HCH-Chr8:4749274 | HCH8g0112 | HCH-Chr8:4797189 | 7.10E-69 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33976 | None | None | None | None | HCH | TF |
Pathway information
