Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0114 ATGGCAGATCGTGATGAACAAGATCTGCAGCTGCCCATTGCCAATGTTGGTAGGATAATGAAGAAGATACTTCCCCAGAGAGCCAAGATTTCCAAAAAAGCCAAACAAACGATCCAAGAATGTGCTACTGAGTTCATAAGCTTTGTTACAAGTGAAGCAGCACAAAAGTGTCACAACGAGAATCGCAGAACCCTCAATGGAGATGACATTTATTGGGCTTTTGGTGCTCTCGGCCTTGATAATTATGCTGAGGCTTCTGCCAAGTACTTGCACAAGTATAGAGAAGATGAGAGAATGAAGGCTCATTATAAGAAAGGCATTAGAATTCAAGAAGATGGTGAAGAAAAAGAGTTTTATTATGGTGGTAACGGTGAGAGCTCTGGACAAGTTTATAATCACTAA 402 40.8 MADRDEQDLQLPIANVGRIMKKILPQRAKISKKAKQTIQECATEFISFVTSEAAQKCHNENRRTLNGDDIYWAFGALGLDNYAEASAKYLHKYREDERMKAHYKKGIRIQEDGEEKEFYYGGNGESSGQVYNH 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4866571 4866972 + evm.model.ptg000008l.1421 HCH8g0114 549212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0114 133 SUPERFAMILY Histone-fold 7 122 IPR009072 GO:0046982(InterPro)
HCH8g0114 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 110 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
HCH8g0114 133 Gene3D Histone, subunit A 2 121 IPR009072 GO:0046982(InterPro)
HCH8g0114 133 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
HCH8g0114 133 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
HCH8g0114 133 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
HCH8g0114 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1682 HCH-Chr6:49628191 HCH8g0114 HCH-Chr8:4866571 2.10E-28 dispersed
HCH4g0997 HCH-Chr4:6415358 HCH8g0114 HCH-Chr8:4866571 6.10E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33977 PF00808 CBFD_NFYB_HMF 6.20E-24 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0114 K08065 - csv:101208858 157.147