Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0128 | ATGAACCAACATGGGCACAGCCAGCCTCCATCTATGGGAGCGGTTGGCAGTGGAGGTCAGTTGCCATATGGTAGCAACCTATTCCAGCCTAACCAAATGACTGGAGGCCCAAGTTCGGGATCTGTTGTTACATCCGTTGGAGCTATTCAGTCTACGAGTCAACCTGGTGGTGCTCAGCTTGCTCAACACCAACTTGCTTATCAACATATCCACCAGCAGCAACAGCAGCACCTTCAACAAGAACTCCATTCTTTTTGGGAAAATCAGTACCAAGAGATAGAGAGGGTAACTGACTTCAAGAACCATAGTCTTCCGTTAGCAAGGATCAAGAAGATTATGAAGGCCGATGAGGATGTACGAATGATATCAGCTGAGGCACCGGTTTTGTTTGCTAGGGCATGTGAAATGTTTATCTTGGAATTGACTTTACGGTCTTGGAATCATACAGAAGAGAACAAACGAAGAACGCTTCAGAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGACATTGTCCCAAGGGAAGATCTGAAAGATGAAGTAATCACGCCAATTCCGAGAGGAACAATGGCTGTTGGAGGGCCTGGAGATTCACTTTCTTATTGCTATATGCCCTCTCAGCATGCACCTCAGGTTGGTGCCCCTGGGATGATTATGGGTAAGCCTGTGATGGATCCGGCTATGTATGCTCAACAACCTCACCCTTACATGGCACCACAAATGTGGCCGCATGCACAAGATCAAGCCCCTCCTGATCAATAG | 783 | 46.74 | MNQHGHSQPPSMGAVGSGGQLPYGSNLFQPNQMTGGPSSGSVVTSVGAIQSTSQPGGAQLAQHQLAYQHIHQQQQQHLQQELHSFWENQYQEIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVITPIPRGTMAVGGPGDSLSYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAQQPHPYMAPQMWPHAQDQAPPDQ | 260 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5282909 | 5283691 | - | evm.model.ptg000008l.1407 | HCH8g0128 | 549226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0128 | 260 | SUPERFAMILY | Histone-fold | 73 | 175 | IPR009072 | GO:0046982(InterPro) | |
| HCH8g0128 | 260 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| HCH8g0128 | 260 | Pfam | Core histone H2A/H2B/H3/H4 | 71 | 166 | IPR007125 | GO:0003677(InterPro) | |
| HCH8g0128 | 260 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 83 | 187 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| HCH8g0128 | 260 | FunFam | Nuclear transcription factor Y subunit gamma | 68 | 181 | - | - | |
| HCH8g0128 | 260 | MobiDBLite | consensus disorder prediction | 22 | 42 | - | - | |
| HCH8g0128 | 260 | Gene3D | Histone, subunit A | 65 | 181 | IPR009072 | GO:0046982(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g0451 | HCH-Chr3:2867793 | HCH8g0128 | HCH-Chr8:5282909 | 1.10E-50 | dispersed | |
| HCH4g1759 | HCH-Chr4:30658108 | HCH8g0128 | HCH-Chr8:5282909 | 1.60E-67 | dispersed | |
| HCH8g0128 | HCH-Chr8:5282909 | HCH8g1484 | HCH-Chr8:49186037 | 6.50E-50 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33978 | PF00808 | CBFD_NFYB_HMF | 2.80E-18 | CL0012 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH8g0128 | K08066 | - | csv:101209664 | 436.802 |