Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0128 ATGAACCAACATGGGCACAGCCAGCCTCCATCTATGGGAGCGGTTGGCAGTGGAGGTCAGTTGCCATATGGTAGCAACCTATTCCAGCCTAACCAAATGACTGGAGGCCCAAGTTCGGGATCTGTTGTTACATCCGTTGGAGCTATTCAGTCTACGAGTCAACCTGGTGGTGCTCAGCTTGCTCAACACCAACTTGCTTATCAACATATCCACCAGCAGCAACAGCAGCACCTTCAACAAGAACTCCATTCTTTTTGGGAAAATCAGTACCAAGAGATAGAGAGGGTAACTGACTTCAAGAACCATAGTCTTCCGTTAGCAAGGATCAAGAAGATTATGAAGGCCGATGAGGATGTACGAATGATATCAGCTGAGGCACCGGTTTTGTTTGCTAGGGCATGTGAAATGTTTATCTTGGAATTGACTTTACGGTCTTGGAATCATACAGAAGAGAACAAACGAAGAACGCTTCAGAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGACATTGTCCCAAGGGAAGATCTGAAAGATGAAGTAATCACGCCAATTCCGAGAGGAACAATGGCTGTTGGAGGGCCTGGAGATTCACTTTCTTATTGCTATATGCCCTCTCAGCATGCACCTCAGGTTGGTGCCCCTGGGATGATTATGGGTAAGCCTGTGATGGATCCGGCTATGTATGCTCAACAACCTCACCCTTACATGGCACCACAAATGTGGCCGCATGCACAAGATCAAGCCCCTCCTGATCAATAG 783 46.74 MNQHGHSQPPSMGAVGSGGQLPYGSNLFQPNQMTGGPSSGSVVTSVGAIQSTSQPGGAQLAQHQLAYQHIHQQQQQHLQQELHSFWENQYQEIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVITPIPRGTMAVGGPGDSLSYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAQQPHPYMAPQMWPHAQDQAPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5282909 5283691 - evm.model.ptg000008l.1407 HCH8g0128 549226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0128 260 SUPERFAMILY Histone-fold 73 175 IPR009072 GO:0046982(InterPro)
HCH8g0128 260 MobiDBLite consensus disorder prediction 1 42 - -
HCH8g0128 260 Pfam Core histone H2A/H2B/H3/H4 71 166 IPR007125 GO:0003677(InterPro)
HCH8g0128 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 187 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH8g0128 260 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
HCH8g0128 260 MobiDBLite consensus disorder prediction 22 42 - -
HCH8g0128 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0128 K08066 - - csv:101209664 436.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0451 HCH-Chr3:2867793 HCH8g0128 HCH-Chr8:5282909 1.10E-50 dispersed
HCH4g1759 HCH-Chr4:30658108 HCH8g0128 HCH-Chr8:5282909 1.60E-67 dispersed
HCH8g0128 HCH-Chr8:5282909 HCH8g1484 HCH-Chr8:49186037 6.50E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT3G48590 87.9 4.3e-85 311.2
HCH3g0451 . 39 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.2 6.2e-84 307.4
HCH4g1759 . 81 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.0 1.1e-51 200.3
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.3 1.2e-50 196.8
HCH8g0128 . 16 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 7.0e-56 214.2
HCH4g1759 . 27 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 51.7 2.4e-48 189.1
HCH8g1484 . 5 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 5.2e-43 171.4
HCH3g0451 . 38 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 81.0 5.8e-42 167.9
HCH8g0128 . 16 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 1.5e-63 239.6
HCH4g1759 . 81 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 4.0e-53 204.9
HCH8g1484 . 34 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 65.6 1.1e-50 196.8
HCH3g0451 . 38 195 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.6 2.4e-50 195.7
HCH8g1484 . 34 189 CCAAT-HAP5 Transcription Factor Family AT5G50480 55.3 9.9e-38 153.7
HCH3g0451 . 38 194 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.1 2.2e-37 152.5
HCH3g0451 . 39 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.6 6.0e-77 284.3
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT5G63470 78.2 2.3e-76 282.3
HCH4g1759 . 81 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.5 2.6e-48 189.1
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.4 3.4e-48 188.7
HCH4g1759 . 50 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.1 2.7e-64 241.9
HCH3g0451 . 39 163 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.4e-49 193.0
HCH8g1484 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.9e-49 192.6
HCH8g0128 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 61.5 9.4e-49 190.3
HCH1g0595 . 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.9 4.1e-61 231.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33978 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 HCH TF