Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0133 ATGGAAGTTAACAATGTGACTGCAGCAGCACCTGTTGTAGCAACTAGAAACCACACACATAAGCACCACTATCCACCAAATTCAGAAATCCATAACCATCACCATGGCATTCTCAGTTCCAACTCTTTTCTCATCATTGTTGCCTCCATCATCTTAATTACTATACTCGTTGCCATTCTCGTCATCGTGTTGATGCTTCAACGGCTCAAAGCTGCAAGAAACAAAGCAACCTGCAGAGAAATCAATAGCATCCACAACTCAAATAGCAGCAGATTCATTGCTCACACAACCATTAATTTTGATTCAAGCCCAGAATTGAAGGGAGGTGGGTGCTTATATGGAGGGAATCAAGGAAGAAATCCTCAATATAGAATCAGAGGAGTCCAAGTGTTCACATATAAGGAGCTGGAGTTGGCCACTGAGAATTTCAGTGAAGGAAATGTGATTGGGAGTGGAAGGTTTGGAGTTTTGTTCAAAGGGGTCCTCACTGATGGGTCTCTGGTTGCAATTAAGATGCTGCAGAGGGAAGGAAAGCAAAGGGAACGTGCCTTCAGAATGGAGGTGGATCTACTGAGCCGCTTGCATTCCCCTTTTTTGGTGGAGTTACTTGGCTACTGTGCTGACCAAAACCATAGGCTCCTAATATTTGAATTCATGCACAATGCTACACTTCATCATCATCTGCATAATTCCAACAGCGAATCTCAGCCGTTGGATTGGGGTACTCGGTTAAGGATAGCCCTTGACTGTGCCAGGGCACTTGAATTCCTCCATGAGCATGCAGTCCCATCTGTTATCCATCGTAACTTCAAGTCTTCCAATATTCTACTGGATCGGAATTTCCGAGCCAAAATGTCCGATTTCGGATCAGCCAAGATGGGGTCTGATAAGATCAACGGTCAGATATCTACAAAAGTCCTGGGAACCACAGGATATCTAGCACCAGAGTATGCTTCAACAGGTAAGCTCACTACAAAGTCGGATGTATACAGCTATGGTGTTGTACTTCTAGAGCTATTGACGGGTCGTGTGCCAGTTGATATCAAGCGGCCACAGGGGGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGTCTAACTAATAGGGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGGAAATACTCTAAGAAGGATCTAATTCAGGTAGCAGCCATTGCAGCCATGTGTGTGCAGCCCGAAGCAGACTATAGGCCTTTAATGACCGATGTTGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCCTCCTCATCCTCTAGATCCTTGAATTGA 1296 44.75 MEVNNVTAAAPVVATRNHTHKHHYPPNSEIHNHHHGILSSNSFLIIVASIILITILVAILVIVLMLQRLKAARNKATCREINSIHNSNSSRFIAHTTINFDSSPELKGGGCLYGGNQGRNPQYRIRGVQVFTYKELELATENFSEGNVIGSGRFGVLFKGVLTDGSLVAIKMLQREGKQRERAFRMEVDLLSRLHSPFLVELLGYCADQNHRLLIFEFMHNATLHHHLHNSNSESQPLDWGTRLRIALDCARALEFLHEHAVPSVIHRNFKSSNILLDRNFRAKMSDFGSAKMGSDKINGQISTKVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPSLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSSRSLN 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5392505 5395355 - evm.model.ptg000008l.1402 HCH8g0133 549231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0133 431 ProSiteProfiles Protein kinase domain profile. 143 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0133 431 CDD STKc_IRAK 149 419 - -
HCH8g0133 431 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524(InterPro)
HCH8g0133 431 FunFam Somatic embryogenesis receptor kinase 1 114 218 - -
HCH8g0133 431 Gene3D Transferase(Phosphotransferase) domain 1 219 429 - -
HCH8g0133 431 Pfam Protein tyrosine and serine/threonine kinase 146 416 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0133 431 PANTHER OS01G0750732 PROTEIN 15 421 IPR050885 -
HCH8g0133 431 SUPERFAMILY Protein kinase-like (PK-like) 122 416 IPR011009 -
HCH8g0133 431 Gene3D Phosphorylase Kinase; domain 1 113 218 - -
HCH8g0133 431 FunFam Receptor-like serine/threonine-protein kinase ALE2 219 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0459 HCH-Chr4:2967227 HCH8g0133 HCH-Chr8:5392505 3.80E-76 dispersed
HCH7g0117 HCH-Chr7:761567 HCH8g0133 HCH-Chr8:5392505 2.00E-114 dispersed
HCH8g0133 HCH-Chr8:5392505 HCH8g0646 HCH-Chr8:43267767 3.60E-82 dispersed
HCH7g1120 HCH-Chr7:43960087 HCH8g0133 HCH-Chr8:5392505 4.00E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81674 PF07714 PK_Tyr_Ser-Thr 2.00E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0133 - - - 0.0