Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0159 | ATGACTCCAATGTTCAATTATGTTGTGTCAAGATGGCAAATGTTATCTACTTCTGATCATGCCTCTGTGGTTTCTATAAACTTATTTGTGGCACTTCTTTGTGCCTGTATTGTGCTTGGTCATCTTCTTGAGGAGAATCGATGGATGAATGAATCGATCACTGCCCTTTTGATTGGTTTGTGCACTGGAGTTGTCATTTTACTGCTCAGCGGAGGGAAAAGTTCGCACCTAATGGTCTTTAGTGAAGACACATTCTTTATTTATCTTCTCCCACCAATTATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTAGTACAATTATGCTGTTTGGTGCCATTGGTACATTAATCTCGTGTTGCATTATATCATTTGGTGTTCTACAGTTTTTTAAGAAAATGGACATTGGATCACTGAGTATAGGTGACATTTTAGCAATCGGCGCTATATTTGCTGCAACAGATTCTGTATGCACATTGCAGATTTTAAATCAGGATGAAACACCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTCAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCCAGAGCTTGGACCTTAGTAGCATTGATCCAGGAATTGGTTTACATATTATTGGAAGCTTCTTTTATTTGTTTTTCATGAGCACTCTTCTTGGAGTATTCACTGGGCTGCTGAGTGCTTATATTATCAAGAAATTGTATTTTGGCAGGCACTCAACAGATCGTGAGGTAGCCCTAATGATGCTCATGGCATACCTTTCGTATATGCTGGCCGAATTATTAAGTTTGAGTGGCATTCTCACAGTCTTCTTTTGTGGAATTGTGATGTCACATTATACCTGGCATAATGTGACTGAGAGTTCAAGAGTTACCACCAAGCATGCTTTTGCAACCTTATCCTTCATTGCAGAGATTTTTATCTTCGTTTATGTTGGTATGGATGCATTGGACATTGAGAAATGGAGATTTGTTAGTGATAGTCCTGGGACATCAGTTGCTGTCAGTTCAATATTGCTTGGCCTGGTTATGGTTGGAAGAGCTGCATTTGTTTTTCCATTATCATTTTTATCCAACTTAGCCAAAAAATCGCAAGGGGATAAAATTAGCTTCAAGGAACAAGTTATAATTTGGTGGGCGGGTCTCATGAGAGGGGCTGTCTCTATCGCTCTTGCTTATCATCAGTTCACCAGAGCGGGGCATACTCAATTGCGAGGGAATGCAATAATGATCACCAGTACCATAACTGTTGTCCTTTTCAGCACCGTGGTGTTTGGGCTATTGACGAAGCCTCTTATAAGCTGGTTGATACCTCATCCAAACCCCACAGCCAGCATGCTATCAGATCCATCAACTCCCAAATCATTCACGGTGCCACTTCTTGGAAGTGCACAGGATTCAGAACTGGATCTCGACAGCCACCTCGTTCCTCGTCCAAGCAGTATACGCGCACTCCTAGCCACCCCTACACACACCGTTCATCGCTACTGGCGAAAGTTTGACGATGCCTTCATGCGTCCAATGTTCGGGGGCCGTGGTTTTGTTCCCTTCGTTCCGGGATCGCCCACTGAAAGAAGTGCCCACTGA | 1614 | 42.26 | MTPMFNYVVSRWQMLSTSDHASVVSINLFVALLCACIVLGHLLEENRWMNESITALLIGLCTGVVILLLSGGKSSHLMVFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFSTIMLFGAIGTLISCCIISFGVLQFFKKMDIGSLSIGDILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSSIDPGIGLHIIGSFFYLFFMSTLLGVFTGLLSAYIIKKLYFGRHSTDREVALMMLMAYLSYMLAELLSLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFIFVYVGMDALDIEKWRFVSDSPGTSVAVSSILLGLVMVGRAAFVFPLSFLSNLAKKSQGDKISFKEQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAIMITSTITVVLFSTVVFGLLTKPLISWLIPHPNPTASMLSDPSTPKSFTVPLLGSAQDSELDLDSHLVPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERSAH | 537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 6006909 | 6011928 | - | evm.model.ptg000008l.1376 | HCH8g0159 | 549257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0159 | 537 | Gene3D | - | 146 | 197 | - | - | |
| HCH8g0159 | 537 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH8g0159 | 537 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH8g0159 | 537 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH8g0159 | 537 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH8g0159 | 537 | Pfam | Sodium/hydrogen exchanger family | 31 | 444 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| HCH8g0159 | 537 | NCBIfam | sodium/hydrogen exchanger 3 | 24 | 445 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH8g0159 | 537 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 19 | 529 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1234 | HCH-Chr12:11917744 | HCH8g0159 | HCH-Chr8:6006909 | 9.70E-170 | dispersed | |
| HCH4g0977 | HCH-Chr4:6268901 | HCH8g0159 | HCH-Chr8:6006909 | 1.60E-172 | dispersed | |
| HCH4g0978 | HCH-Chr4:6274160 | HCH8g0159 | HCH-Chr8:6006909 | 4.60E-204 | dispersed | |
| HCH8g0159 | HCH-Chr8:6006909 | HCH6g1660 | HCH-Chr6:49508646 | 1.40E-221 | transposed |
Pathway information