Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0160 ATGGGGTGTTTGATTAGCCGTGAGGCATCTTCGAGAAGTGTGGAAGCTCCTGTTGATAAGGGGAAAAGGAATCAAAGCATTGAATCTTCTCATGTACAAGTTGTGGAAAAAGGGGAAGAGAATGTGAATGTTAAGGAGGATGAAAATGTAAATGTAAATGTGAGCAAGGAGGAGGAGAATGGTGATGGGGGTCAGGGTCAGGTTCGGGGTGAGCAACGGCCACGAGGGGAGAGGAGAAAGTCGAGGAAGGTTCCGAGACCGACTAATCTGCCAAACCAGTCTCGGGGGGAGCAAGTTGCTGCTGGATGGCCATCTTGGCTCACAGCAGTGTGTGGGGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCGGATACGTTTGAAAAGATTGATAAGATTGGACAAGGAACATATAGCAATGTGTACAAAGCTAAAGATATGATTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGCTTTGACAATCTGGAGCCTGAAAGTGTGAAATTCATGGCTAGAGAGATTCTCATTTTAAGGAGACTTAATCATCATAATGTTGTAAAGTTGGAAGGTTTGGTTACATCACGGATGTCTTGTAGTTTGTACCTGGTGTTTGAGTACATGGAGCATGATTTAGCTGGTCTTGCCGCAAATCCATCAATCAAATTCACTGAATCTCAGGTGAAGTGTTTCATGCAACAACTGCTATCTGGACTGGAACATTGTCATAATAACCATGTCCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTAATAGTGGAGGAGTGCTTAAGATTGCTGACTTTGGATTGGCGTCTTTCTTTGATCCAATTCACAAGCACCCTATGACTAGTCGTGTAGTTACCTTATGGTACCGGCCTCCTGAGCTTCTTCTTGGAGCGACTGATTATGGTGTAGGTGTAGACCTCTGGAGCGCTGGCTGTATAGTGGCTGAATTGTTAGCTGGGCGACCCATTATGCCTGGCCGTACAGAGGTAGAGCAACTACACAAGATATATAAGCTTTGCGGCTCCCCTTCAGATGAATATTGGAAAAGAGCCAAACTGCCGAATGCTACTTTATTTAAACCGAGAGAGCCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTTCCACCATCTTCATTTCCTCTTATAGAATCTCTTCTTGCAATTGATCCAGTAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACCGAACCTTTAGCTTGTAAACCCTCCAGCCTTCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGACGACGTGACGATGAAGCTCGGAGATTAAGAGCAGCTAGTAAAGCCCAAGGAGATGGAATGAAGAAAACACGAACGCGTGTTCGCGCTGCTCCTGCTCCTGAAGCCAATGCTGAACTACAAACAAACATTGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTCCCCCCACCACACCAGGACGGAGCACTTGGCTTTACACTAGGATATTCACGTCATATCGATCCCGCCGGTGTTCCTCAAGACATACCATTCAGTTCAACCTTGTTCACATATTCAAAGGATCCAATCCAAGCTTGGTCAGGTCCACTGGTTCCTGGTGCTGGTGGTGATGCTCCTAGACAGAAGAAGCATGTAGGAGGAAAAGGCAAGAAAAGCATGGTCTAA 1707 44.58 MGCLISREASSRSVEAPVDKGKRNQSIESSHVQVVEKGEENVNVKEDENVNVNVSKEEENGDGGQGQVRGEQRPRGERRKSRKVPRPTNLPNQSRGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDMITGKIVALKKVRFDNLEPESVKFMAREILILRRLNHHNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNNHVLHRDIKGSNLLINSGGVLKIADFGLASFFDPIHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCIVAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSFPLIESLLAIDPVERKTATDALNSEFFMTEPLACKPSSLPKYPPSKEMDARRRDDEARRLRAASKAQGDGMKKTRTRVRAAPAPEANAELQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAGVPQDIPFSSTLFTYSKDPIQAWSGPLVPGAGGDAPRQKKHVGGKGKKSMV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6049572 6056647 - evm.model.ptg000008l.1375 HCH8g0160 549258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0160 568 FunFam probable serine/threonine-protein kinase At1g54610 209 450 - -
HCH8g0160 568 MobiDBLite consensus disorder prediction 487 506 - -
HCH8g0160 568 FunFam probable serine/threonine-protein kinase At1g54610 113 208 - -
HCH8g0160 568 Pfam Protein kinase domain 126 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0160 568 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
HCH8g0160 568 CDD STKc_CDK9_like 126 410 - -
HCH8g0160 568 MobiDBLite consensus disorder prediction 1 99 - -
HCH8g0160 568 PANTHER CELL DIVISION PROTEIN KINASE 125 410 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH8g0160 568 MobiDBLite consensus disorder prediction 428 462 - -
HCH8g0160 568 Gene3D Phosphorylase Kinase; domain 1 113 208 - -
HCH8g0160 568 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524(InterPro)
HCH8g0160 568 MobiDBLite consensus disorder prediction 33 55 - -
HCH8g0160 568 SMART serkin_6 126 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0160 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0160 568 ProSiteProfiles Protein kinase domain profile. 126 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0160 568 Gene3D Transferase(Phosphotransferase) domain 1 209 449 - -
HCH8g0160 568 MobiDBLite consensus disorder prediction 540 568 - -
HCH8g0160 568 MobiDBLite consensus disorder prediction 420 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1131 HCH-Chr7:44079946 HCH8g0160 HCH-Chr8:6049572 3.10E-222 dispersed
HCH8g0160 HCH-Chr8:6049572 HCH9g0868 HCH-Chr9:6216658 1.20E-48 dispersed
HCH10g0786 HCH-Chr10:7981404 HCH8g0160 HCH-Chr8:6049572 1.10E-232 wgd
HCH10g0757 HCH-Chr10:7186141 HCH8g0160 HCH-Chr8:6049572 2.00E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81675 PF00069 Pkinase 2.90E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0160 K08819 - csv:101215893 996.882