Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0166 ATGAAACACATTTTCAAGAAATTCCACATTGGAAGCAACCATGAACCAAATCGATCAAATGAAAATCCATCGCCAATTGCTTCTTCATCATCACCATCATCATCGTCCTCATGTGCTTCCGATCATCGTACGGCTCCCGGCCAAACTTCCAGCAACTCTCCGACGAGTCCTTCCGGAGCTAGTGCGGCAACTCCAGTTTCAGTGGCTCCGAATCATCGCTCTGATTACTTTTCTTCAGAAGAGGAATTTCAAGTTCAGCTTGCCCTAGCTATTAGTGCTTCCAATTCGGACTTTCGTGATGATCCTGAGAAGGATCAGATTCGAGCTGCGACGCTCTTAAGCTTGGGAAATCATCGAATTGATTCAACTAGAGACCAGGGCGATGCTGCCGAGGCGCTTTCGAGGCAATATTGGGAATACAATCTGCTTGACTATGAAGAAAAAGTGGATAATGGGTTTTATGATGTCCTCTCTACGGATTCTGAAATCCAAGGAAAAATCCCATCTCTATCTGATCTTGAAGCAAGCTTTGGCAGTTCTGGCTTTGAAGTTGTGATGGTCAATAGGACTATTGATCCTGCACTAGAAGAGCTGGTGCAAGTTGCTCAATGCATTGCCGATTGCCCTGGCACTGAGGTTAGAGTTCTGGTTCAGAGGCTTGCGGAGCTTGTTATGGGACACATGGGTGGGCCTGTAAAGGATGCCAATTTTATGCTTGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTATATTGCCTATTGGTTCCATAAATATTGGACTTTCAAGACACCGTGCCTTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGATGATGCTGTCAACATTATAAAGTTGGAGGATGATAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACGCTTATACCGGCAGACATTTCAAGTGCAAAGGATACTACCTTAAAGCCTTACAACCCTAAAATAAGCAAAGTTCCTTCTCTCCATTCCTCCGGTGATGCTGGAATAACTTCGTCAAGACCAACATCATCACTTGATGCAGGCAGCAGTCAGAACTTTGAAGCAGAGTCTAGTTTACTGATGGATGGAAGACTGAGCTATGATACTGGGACTTCTCGGTACAAAGGGGCCCGTACGGTTGATAGTAATGCTAGACTGAATGTCAGTGTAGTTCCATGTGGTCAAAGCTCTGAGGATTCCAAAAACCTCTTTGCAGATCTCAATCCATTCCAAATAAAAGGAACTGGAAAAAGTTTTATACATAATAAATCCACTGATAATAAAATTGAGGAGCTTCAGAAACCTGCTGTTGGCAATCCCCCTGTACCGTTGATGTGGAAAAATCGACATGCTTTCAATGAAGTCCCGAAGAAAAAAGAGTTTGATTATATGGAGTCCCGATTTCCAAGAATTAGTCGTGGATCTAATGATCAGAACGTATCATCGTCTTCTTCTGCCAACTCTACTGTCTCTGATATGTTCAATCCTGATGGTTTAGGAACATCCAGTAACTCAAGTGTACTAATCAGAAGTGCAGATGTTGGAAGTTCTTCATCTAATGTCAATTTATGGTCAACATCTACGATGGTTGAGCCGAATAGGTTGCCTTTGATTGAGGAACAGAACAATAAGCCTAATGGACAGCATTCTGAAAATATAGATGTGCGGGATGATATGGTTGATGCTGTCGAAGAATCTGAAAATTTAATCAGATTTGATGATCGGAGGAAGTTCACATATGATAGATTCGTTGGGACCAATTTGATATCGAAGGATCCAGGAAATTCCAGCCTATCAATTGATCCAAGTTCAAATAGGTTTGAGCAAGTTTATGATGATGTAGATGTGGGTGAATGTGAAATCCAATGGGAAGACCTGGTTATTGGTGAAAGAATTGGACTAGGTTCATACGGAGAAGTCTACCATGCTGATTGGAATGGCACAGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTTAAAAGAGAAGTACTGATAATGCGGCAATTGCGTCATCCAAATGTTGTGCTTTTTATGGGTGCTGTCACCCGTCCTCCTAACCTTTCGATCGTTACCGAGTTTCTTCCAAGAGGAAGCTTGTATCGGATTATTCACCGTCCTCAGCATCAAAATGATGAAAAGCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGTATGAATTGCTTGCATACAAGTAATCCAACAATCGTTCACCGAGATTTGAAGTCACCTAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTATGTGATTTTGGGTTGTCACGCCTGAAGCACAACACATTTTTGTCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTTCTTCGCAATGAACCTTCAAATGAGAAGTGTGATGTGTATAGCTTTGGAATCATTCTATGGGAACTTGCTACTTTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCTGTAGGTTTCCAGAATCGCCGACTTGAAATCCCGAAGGAAGTTGATCCGGTGGTTGCAAGGATAATTTGGGAATGTTGGCAGACTGATCCAAACTTGCGCCCCTCATTTGCACAACTAACTGTGGCTCTAAAGCCACTGCAGCGGCTCGTCCTGTCGCCACATACAGACCAGCCAGGCTCATCTGTGCTGCAGCAAGAGATTTCTGTAAATTCTACACCATGA 2793 43.22 MKHIFKKFHIGSNHEPNRSNENPSPIASSSSPSSSSSCASDHRTAPGQTSSNSPTSPSGASAATPVSVAPNHRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTRDQGDAAEALSRQYWEYNLLDYEEKVDNGFYDVLSTDSEIQGKIPSLSDLEASFGSSGFEVVMVNRTIDPALEELVQVAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDANFMLARWMERSTELRTSLHTSILPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEDDAVNIIKLEDDREFLVDLMAAPGTLIPADISSAKDTTLKPYNPKISKVPSLHSSGDAGITSSRPTSSLDAGSSQNFEAESSLLMDGRLSYDTGTSRYKGARTVDSNARLNVSVVPCGQSSEDSKNLFADLNPFQIKGTGKSFIHNKSTDNKIEELQKPAVGNPPVPLMWKNRHAFNEVPKKKEFDYMESRFPRISRGSNDQNVSSSSSANSTVSDMFNPDGLGTSSNSSVLIRSADVGSSSSNVNLWSTSTMVEPNRLPLIEEQNNKPNGQHSENIDVRDDMVDAVEESENLIRFDDRRKFTYDRFVGTNLISKDPGNSSLSIDPSSNRFEQVYDDVDVGECEIQWEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPQHQNDEKRRIKMALDVARGMNCLHTSNPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPVVARIIWECWQTDPNLRPSFAQLTVALKPLQRLVLSPHTDQPGSSVLQQEISVNSTP 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6185226 6199222 - evm.model.ptg000008l.1369 HCH8g0166 549264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0166 930 MobiDBLite consensus disorder prediction 1 67 - -
HCH8g0166 930 SMART serkin_6 648 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 MobiDBLite consensus disorder prediction 340 373 - -
HCH8g0166 930 FunFam PAS domain-containing protein tyrosine kinase family protein 726 914 - -
HCH8g0166 930 MobiDBLite consensus disorder prediction 493 519 - -
HCH8g0166 930 SUPERFAMILY Protein kinase-like (PK-like) 625 896 IPR011009 -
HCH8g0166 930 MobiDBLite consensus disorder prediction 492 519 - -
HCH8g0166 930 Gene3D Phosphorylase Kinase; domain 1 641 725 - -
HCH8g0166 930 MobiDBLite consensus disorder prediction 15 67 - -
HCH8g0166 930 PANTHER SERINE-THREONINE PROTEIN KINASE 29 901 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH8g0166 930 PRINTS Tyrosine kinase catalytic domain signature 722 735 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 PRINTS Tyrosine kinase catalytic domain signature 827 849 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 PRINTS Tyrosine kinase catalytic domain signature 808 818 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 PRINTS Tyrosine kinase catalytic domain signature 761 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 PRINTS Tyrosine kinase catalytic domain signature 871 893 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 CDD STKc_MAP3K-like 654 897 - -
HCH8g0166 930 Pfam Protein tyrosine and serine/threonine kinase 649 898 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 FunFam Serine/threonine-protein kinase isoform 1 639 726 - -
HCH8g0166 930 ProSiteProfiles Protein kinase domain profile. 648 907 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0166 930 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524(InterPro)
HCH8g0166 930 Gene3D Transferase(Phosphotransferase) domain 1 727 908 - -
HCH8g0166 930 MobiDBLite consensus disorder prediction 346 373 - -
HCH8g0166 930 Pfam Ethylene-responsive protein kinase Le-CTR1 130 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0854 HCH-Chr2:52165113 HCH8g0166 HCH-Chr8:6185226 1.90E-73 dispersed
HCH3g0203 HCH-Chr3:1295055 HCH8g0166 HCH-Chr8:6185226 3.60E-173 dispersed
HCH6g1751 HCH-Chr6:50008366 HCH8g0166 HCH-Chr8:6185226 3.20E-97 dispersed
HCH8g0166 HCH-Chr8:6185226 HCH9g0516 HCH-Chr9:3311571 1.60E-122 dispersed
HCH8g0166 HCH-Chr8:6185226 HCH11g0373 HCH-Chr11:3504491 4.90E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81676 PF07714 PK_Tyr_Ser-Thr 7.90E-63 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0166 - - - 0.0