Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0180 ATGAATGATTTTTCTCATCTTCAAGACCCAGATTTTTCTCACTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATACAATGAAATCCTTGGGAAAGGAGCTTCTAAAACAGTTTATAGAGCATTTGATGAGTATGAAGGAATTGAAGTTGCTTGGAACCAAGTCAAACTTTGTAACTTCCTGCAATGCCCTGAAGATCTTGAAAGGCTATACTCTGAGATTCATCTTTTAAAAACATTGAAACATAACAACATTATGAAATTCTATACTTCGTGGGTCGATACCGCGAATAGGAACGTCAATTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTTTAGGCTAAAGCATAGGGGAGTTAACATTAGAGCGGTGAAGCGATGGTGTAGACAGATCTTGATGGGTCTTCTCTACTTGCATAGCCAAGACCCTCCTGTTATCCACAGAGATCTCAAGTGTGACAATATTTTTGTAAATGGAAACCAAGGAGAGCTTAAGATTGGAGATCTTGGCCTCGCTGCTATTCTCCGAAAATCACATGCTGCTCATTGTGTTGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTTGATATTTATTCCTTTGGGATGTGTGTTTTGGAGATGGTTACATTGGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAACTTCTGGGAAAAAACCAGATGCCTTGTTTAAAGTGAAAGATCCGAAAATGAGACAATTTGTTGAGAAATGCTTGGCACCAGTTTCTTATAGGCTTTCGGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATCGATGATTGCGAAAGCAGGTTTAAAAATTCTGACTGTGGCGGAGAACTCAATGGTGTTTGTTCTACTGTAAGGAAGCCTTTCCTTGAACATGAAAGAAGTAGCAGCTCCCTTTGTAATGGATGCTCAATCGATTACAGTTTGGATGCCTCGAGTGAATGGAGGTACCATACAGTTGAGACGGAACCCAGTGGCATTGAACTTTTTGATGACCAAGATGATGACCAATTGGACGACATTGACAATAGTATTAAAGGGAAGATAAGAGAAGATGGTAGTATTGTCTTAAGAATTAGGATTGCAGATAAAGAAGGACATATCCGAAACATATATTTCCCATTTGACACGAAGACTGACACAGCATCGACAGTTGCCAACGAAATGATAGCAGAACTCGATATTACCGATCAGGATGTGACCAAAATAGCCGAGAAAATTGATGGGGAAATTTCTTCCTTGGTACCTGAGTGGAAGCCAGGGCCGGGCATAGATGAAGCACCACACATCTCTTTTGATGGTGTCCATCAAAATTTCACTTCTAACCATCCATCTGATAGTCATTTGATTGAGAATTTGCCAAATGGAGCAAATGACTCTCAGATTCTAAACTACAGCCAGGATGGATGTGCTTCAACACAGGGTCGTTTTGAGACGAACTTCAAAACTGGTCAGACTATGCATCATGTGATAGAGGAGGATACACCAAAAGAGTCCAGCCAATTTAGGTGTCAGGATTATCAACTAATTCCTTTCCTACATGAAAACCAAGCACTTGGCTCTCAGAGTTTTGGGCTGAGCCATTCTGATCGAATCTACAAGAAAATAGACCAATCAATTACTGATACGGATGATAAAGAAATAGTATTGGAAAGCAAAGTTGCTGCCATTGCAAAAAGTTCAATCAGAAGCTTATTGGGTTCCCGCTCTTTATCTGCTGTTCCTTCCTATTGTGAAGATAAACTTGCATCTCAAATCCAGTGGGAAGTTAGATGGCTATGGAATTGA 1854 39.91 MNDFSHLQDPDFSHYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHNNIMKFYTSWVDTANRNVNFVTEMFTSGTLRQFRLKHRGVNIRAVKRWCRQILMGLLYLHSQDPPVIHRDLKCDNIFVNGNQGELKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTLEYPYSECNHPVQIYKKVTSGKKPDALFKVKDPKMRQFVEKCLAPVSYRLSARELLSDPFLQIDDCESRFKNSDCGGELNGVCSTVRKPFLEHERSSSSLCNGCSIDYSLDASSEWRYHTVETEPSGIELFDDQDDDQLDDIDNSIKGKIREDGSIVLRIRIADKEGHIRNIYFPFDTKTDTASTVANEMIAELDITDQDVTKIAEKIDGEISSLVPEWKPGPGIDEAPHISFDGVHQNFTSNHPSDSHLIENLPNGANDSQILNYSQDGCASTQGRFETNFKTGQTMHHVIEEDTPKESSQFRCQDYQLIPFLHENQALGSQSFGLSHSDRIYKKIDQSITDTDDKEIVLESKVAAIAKSSIRSLLGSRSLSAVPSYCEDKLASQIQWEVRWLWN 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6924322 6927072 + evm.model.ptg000008l.1355 HCH8g0180 549278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0180 617 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0180 617 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
HCH8g0180 617 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0180 617 SUPERFAMILY Protein kinase-like (PK-like) 28 283 IPR011009 -
HCH8g0180 617 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 511 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH8g0180 617 FunFam probable serine/threonine-protein kinase WNK9 108 287 - -
HCH8g0180 617 FunFam Probable serine/threonine-protein kinase WNK1 10 106 - -
HCH8g0180 617 Gene3D Transferase(Phosphotransferase) domain 1 108 288 - -
HCH8g0180 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0180 617 CDD STKc_WNK 23 282 - -
HCH8g0180 617 Gene3D - 375 441 - -
HCH8g0180 617 SMART serkin_6 25 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0180 617 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 432 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0854 HCH-Chr6:43323722 HCH8g0180 HCH-Chr8:6924322 6.50E-99 dispersed
HCH6g1589 HCH-Chr6:49078327 HCH8g0180 HCH-Chr8:6924322 1.90E-187 dispersed
HCH7g1726 HCH-Chr7:49040484 HCH8g0180 HCH-Chr8:6924322 1.30E-131 dispersed
HCH8g0180 HCH-Chr8:6924322 HCH9g0831 HCH-Chr9:5873604 1.60E-123 dispersed
HCH10g0772 HCH-Chr10:7501607 HCH8g0180 HCH-Chr8:6924322 3.50E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81677 PF00069 Pkinase 9.40E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0180 K08867 - csv:101222641 888.256