Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0190 ATGGCAGGGATTCCCTCTGAGGGATTAGCTGATGATTTCTTTGAGCAGATTTTGGCAGTGCCACCGTCTTATACAGGTGGAGACGGTGGTGGTTATGGTGGTGGTGATGTTGTGTCTATGCCTATGGTTTTGCAACTTGGGTCTGGCGGCGATGGCGGTGGCGGTGGCGGCGGCGGTATGGGAGGGATGGCGATGCCGTTGGGGCTGAATTTAGAGCAAGGGTTTTTGAGGCAAGATAGATATAGAGAAGAGCTTGAAGCACCCATTAATACTAATAACAATGCTTCTTCTTCATCCACTACTTCTTCTGGAATTACTGAGAGAGATTCGATGCACATGACAAGCTTGTTTCCAAGCTTTGGACATTTGCAGACTCAACCCCTCCGACCACCGCCGCCGCCGTTACATCTCCACCAGCCATTTCACAACCAGGCAGCATCTGGGATGGTTGCTGTCATGCCACAACCACCTACAGTCCGTCCAAGAGTTCGAGCACGACGAGGGCAAGCGACAGATCCTCACAGTATTGCCGAAAGATTGCGTAGGGAAAGAATTGCGGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCAAGTTGCAATAAGACTGATAGAGCGGCTATGCTTGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTGAGCATGAGCAGACTTGGTGGGGCAGGTGCGGTCGCTCAGCTTGTAGCCGATGTACCCCTATCATCAGTCGAGGGAGAGGGAATTGAGAGTGTCAATAATCAGCAAGCATGGGAAAAGTGTTCAAGTGATGGCACAGAGCAACAAGTAGCTAAATTGATGGAAGAAGATGTAGGAGCTGCCATGCAATTCCTGCAGTCTAAAGCTCTATGCATCATGCCCATTTCATTAGCCTCTGCAATTTTCAGGACACACCAACAAGATCCACAAACAATGGTCAAGCCAGAATTGAACACTCCCTAG 975 48.62 MAGIPSEGLADDFFEQILAVPPSYTGGDGGGYGGGDVVSMPMVLQLGSGGDGGGGGGGGMGGMAMPLGLNLEQGFLRQDRYREELEAPINTNNNASSSSTTSSGITERDSMHMTSLFPSFGHLQTQPLRPPPPPLHLHQPFHNQAASGMVAVMPQPPTVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESVNNQQAWEKCSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQQDPQTMVKPELNTP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7162775 7169414 + evm.model.ptg000008l.1345 HCH8g0190 549288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0190 324 SMART finulus 175 224 IPR011598 GO:0046983(InterPro)
HCH8g0190 324 Gene3D - 162 219 IPR036638 GO:0046983(InterPro)
HCH8g0190 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 90 303 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH8g0190 324 FunFam Basic helix-loop-helix transcription factor 164 226 - -
HCH8g0190 324 MobiDBLite consensus disorder prediction 87 106 - -
HCH8g0190 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 228 IPR036638 GO:0046983(InterPro)
HCH8g0190 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983(InterPro)
HCH8g0190 324 Pfam Helix-loop-helix DNA-binding domain 174 219 IPR011598 GO:0046983(InterPro)
HCH8g0190 324 MobiDBLite consensus disorder prediction 86 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0304 HCH-Chr10:2496185 HCH8g0190 HCH-Chr8:7162775 6.60E-44 dispersed
HCH5g0018 HCH-Chr5:103337 HCH8g0190 HCH-Chr8:7162775 1.90E-16 dispersed
HCH8g0190 HCH-Chr8:7162775 HCH8g0922 HCH-Chr8:45517757 2.40E-46 dispersed
HCH8g0190 HCH-Chr8:7162775 HCH7g0833 HCH-Chr7:19648987 2.70E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33984 PF00010 HLH 7.20E-08 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0190 - - - 0.0