Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0190 | ATGGCAGGGATTCCCTCTGAGGGATTAGCTGATGATTTCTTTGAGCAGATTTTGGCAGTGCCACCGTCTTATACAGGTGGAGACGGTGGTGGTTATGGTGGTGGTGATGTTGTGTCTATGCCTATGGTTTTGCAACTTGGGTCTGGCGGCGATGGCGGTGGCGGTGGCGGCGGCGGTATGGGAGGGATGGCGATGCCGTTGGGGCTGAATTTAGAGCAAGGGTTTTTGAGGCAAGATAGATATAGAGAAGAGCTTGAAGCACCCATTAATACTAATAACAATGCTTCTTCTTCATCCACTACTTCTTCTGGAATTACTGAGAGAGATTCGATGCACATGACAAGCTTGTTTCCAAGCTTTGGACATTTGCAGACTCAACCCCTCCGACCACCGCCGCCGCCGTTACATCTCCACCAGCCATTTCACAACCAGGCAGCATCTGGGATGGTTGCTGTCATGCCACAACCACCTACAGTCCGTCCAAGAGTTCGAGCACGACGAGGGCAAGCGACAGATCCTCACAGTATTGCCGAAAGATTGCGTAGGGAAAGAATTGCGGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCAAGTTGCAATAAGACTGATAGAGCGGCTATGCTTGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTGAGCATGAGCAGACTTGGTGGGGCAGGTGCGGTCGCTCAGCTTGTAGCCGATGTACCCCTATCATCAGTCGAGGGAGAGGGAATTGAGAGTGTCAATAATCAGCAAGCATGGGAAAAGTGTTCAAGTGATGGCACAGAGCAACAAGTAGCTAAATTGATGGAAGAAGATGTAGGAGCTGCCATGCAATTCCTGCAGTCTAAAGCTCTATGCATCATGCCCATTTCATTAGCCTCTGCAATTTTCAGGACACACCAACAAGATCCACAAACAATGGTCAAGCCAGAATTGAACACTCCCTAG | 975 | 48.62 | MAGIPSEGLADDFFEQILAVPPSYTGGDGGGYGGGDVVSMPMVLQLGSGGDGGGGGGGGMGGMAMPLGLNLEQGFLRQDRYREELEAPINTNNNASSSSTTSSGITERDSMHMTSLFPSFGHLQTQPLRPPPPPLHLHQPFHNQAASGMVAVMPQPPTVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESVNNQQAWEKCSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQQDPQTMVKPELNTP | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7162775 | 7169414 | + | evm.model.ptg000008l.1345 | HCH8g0190 | 549288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0190 | 324 | SMART | finulus | 175 | 224 | IPR011598 | GO:0046983(InterPro) | |
HCH8g0190 | 324 | Gene3D | - | 162 | 219 | IPR036638 | GO:0046983(InterPro) | |
HCH8g0190 | 324 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 90 | 303 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
HCH8g0190 | 324 | FunFam | Basic helix-loop-helix transcription factor | 164 | 226 | - | - | |
HCH8g0190 | 324 | MobiDBLite | consensus disorder prediction | 87 | 106 | - | - | |
HCH8g0190 | 324 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 167 | 228 | IPR036638 | GO:0046983(InterPro) | |
HCH8g0190 | 324 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 169 | 218 | IPR011598 | GO:0046983(InterPro) | |
HCH8g0190 | 324 | Pfam | Helix-loop-helix DNA-binding domain | 174 | 219 | IPR011598 | GO:0046983(InterPro) | |
HCH8g0190 | 324 | MobiDBLite | consensus disorder prediction | 86 | 106 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0304 | HCH-Chr10:2496185 | HCH8g0190 | HCH-Chr8:7162775 | 6.60E-44 | dispersed | |
HCH5g0018 | HCH-Chr5:103337 | HCH8g0190 | HCH-Chr8:7162775 | 1.90E-16 | dispersed | |
HCH8g0190 | HCH-Chr8:7162775 | HCH8g0922 | HCH-Chr8:45517757 | 2.40E-46 | dispersed | |
HCH8g0190 | HCH-Chr8:7162775 | HCH7g0833 | HCH-Chr7:19648987 | 2.70E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33984 | PF00010 | HLH | 7.20E-08 | No_clan | HCH | TF |
Pathway information
