Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0201 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAAATCCTTAAAGCTGCGGTTATGAAATATGGAAAAAATCAATGGGCTCGAATTTCATCTCTCCTTGTTCGCAAATCTGCTAAACAGTGTAAGGCTCGTTGGTATGAGTGGCTTGATCCCTCCATTAAAAAGACTGAGTGGACGAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCGACACAATGGAGAACTATTGCACCAATTGTTGGGCGTACACCATCCCAATGCCTTGAGCGTTATGAAAAACTTCTTGATGCTGCTTGTGTTAAGGACGAGAATTATGAACCAGGTGATGACCCGAGAAAATTACGTCCTGGAGAAATTGACCCGAACCCTGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAGAAAGAAATGCTTTCGGAAGCACGGGCACGGTTAGCGAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCCAGGAGGCTTGCCTCGCTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATAATAGGCACCGGAAGAGGAAAAGGAAGGGAATCGATTACAATGCAGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTTAGCGAGGAAGATAGACCAGTGGAACAACCGAAATTCCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGATATTGAAGCTCAATTAAGAAAACAAGATATTGCAAAGAATAAAATTTCTCAGAGACAAGATGCTCCATCAGCTGTATTGCAAGCAAATAAACTTAATGACCCAGAAATGGTGAGGAAAAGATCCAAACTTATGCTTCCTGCACCCCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGACCTTCTTGCTGGTACTGAGGGACTTGCAGAAGGAACTGGTGCTACACGAGCTCTTCTTGCAAATTATGCACAGACACCACAACAAGGAATGACACCTTTACGAACTCCACAAAGGACACCTGCTGGGAAGGGAGATGCTATAATGATGGAAGCAGAAAATCTTGCCAGGCTGAGAGAATCTCAGACTCCATTATTAGGAGGAGAGAACCCTGAGCTGCATCCTTCGGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCTAACACCAAATCCTATGCTAACACCCTCAGCAACTCCTGGTGGTGTTAGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGAATGACTCCAAAAGGAACACCTATCAGGGATGAGCTACATATCAATGAAGATACGGAAGTGCAGGATAGTTCAAAACTTGATTCTCAAAGACAAGCCAATTTAAGGAGTAATCTCCGCTTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTCATGCAACCAATTCCAGAAGATGAAGAAGAATCAGAGGAGAAGATTGAAGAAGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAGGCACGACAGCAAGCATTACTTAGGAAAAGATCAAAAGTGCTGCAGAGGGAGCTTCCTCGGCCTCCTGTTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCTCCTACTCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTCCTCGCGCTATTGGAACATGATAACGCTAAGTACCCAATTGATGAAAAAGTAAACAAGGAGAAAAAGAAAGGTTCCAAGCGTTCTGGAAATGGACCTACTGCTGCTGTCCCCACTATAGAAGAATTTGAAGAAGATGAGATGAAAGAGGCTGATCATTTGATAATAGAAGAGGTTCAGTATCTTTGTGCTGCAATGGGGCATGGAAGTGAATCCCTTGATGAATTTGTTGAAGCGCACAAAACCTGCTTGAATGATCTCATGTACTTTCCCACCAGAAATGCATACGGACTTTCCAGTGTTGCTGGAAACCTTGAGAAACTAGCGGCCCTGCAGGATGAGTTTGAGTATGTGAAAAAAAAAATGGACGAGGATACTGAGAAGGCAGTCCGGCTCGAGAAGAAGGTTAAAGTTCTCACGCATGGTTATGAGACACGGTCAAAAACAAGCCTCTGGCCGCAAATTGAGGTAACTTTCAAGCAGATGGATACTGCAGCAAAAGAGCTAGAGTGCTTTGAAGCTTTACAAAAGCAAGAGTTGTTAGCTGCTTCACACAGGATTAATGGTATCTGGGAGGATGTTCAGAAACAGAAAGAGCTGGAGATGACATTGCAGAGACGCTATGGTAATTTGGTGGCAGAATTGGAAAAGATGCAGCAAATCATGGACGAGCACAAGGCACGTGCACAGAAGGAAGAAGAAATCGCGGCAGAGAACCGTGCTCTTCAGTTGGCTGAAGCTGAGGCTGAGGCAAATCAAACTGTTGGAGAGAACCCTGAGAGATCTGAAGCCATGCCTGTATTAGTTGATCATGAAAATTCTGTTGAAAATCACGCTAGTGATGTTCCTTCTCAAGATTTCTTGGGCCCTGCAGAAGTGGCACCAGTGGTGGAAAATACGATCGATTCAGTTGATGGGACAGCTATTGAAAATGCTCCAAGTACTGATTTTGTGAATGAAGCTAAAGATGTTGAAAATCAGCAGCCTGTGGTGGAAGGTGAAAAATCAGAAGTAGATTCTACTAATCTAGATCCCACTGCTCCATCTTCTCATGGAGATGTGGAAGTCCCCCGTGGCGAAGGCGAAGGCGAAGCAATGGCCATCGCCTAG 2862 43.99 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDIEAQLRKQDIAKNKISQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGTEGLAEGTGATRALLANYAQTPQQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEILTPNPMLTPSATPGGVSLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDTEVQDSSKLDSQRQANLRSNLRLGLGNLPQPKNEYQVVMQPIPEDEEESEEKIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNGPTAAVPTIEEFEEDEMKEADHLIIEEVQYLCAAMGHGSESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNLEKLAALQDEFEYVKKKMDEDTEKAVRLEKKVKVLTHGYETRSKTSLWPQIEVTFKQMDTAAKELECFEALQKQELLAASHRINGIWEDVQKQKELEMTLQRRYGNLVAELEKMQQIMDEHKARAQKEEEIAAENRALQLAEAEAEANQTVGENPERSEAMPVLVDHENSVENHASDVPSQDFLGPAEVAPVVENTIDSVDGTAIENAPSTDFVNEAKDVENQQPVVEGEKSEVDSTNLDPTAPSSHGDVEVPRGEGEGEAMAIA 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8317945 8325319 + evm.model.ptg000008l.1334 HCH8g0201 549299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0201 953 Gene3D - 5 59 - -
HCH8g0201 953 Coils Coil 792 832 - -
HCH8g0201 953 SMART sant 58 105 IPR001005 -
HCH8g0201 953 SMART sant 6 55 IPR001005 -
HCH8g0201 953 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
HCH8g0201 953 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
HCH8g0201 953 MobiDBLite consensus disorder prediction 113 150 - -
HCH8g0201 953 MobiDBLite consensus disorder prediction 382 401 - -
HCH8g0201 953 FunFam CDC5 cell division cycle 5-like 60 120 - -
HCH8g0201 953 MobiDBLite consensus disorder prediction 157 176 - -
HCH8g0201 953 CDD SANT 10 53 IPR001005 -
HCH8g0201 953 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
HCH8g0201 953 MobiDBLite consensus disorder prediction 213 235 - -
HCH8g0201 953 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
HCH8g0201 953 Pfam Myb-like DNA-binding domain 10 70 - -
HCH8g0201 953 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 808 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
HCH8g0201 953 MobiDBLite consensus disorder prediction 910 953 - -
HCH8g0201 953 FunFam CDC5 cell division cycle 5-like 5 59 - -
HCH8g0201 953 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
HCH8g0201 953 Coils Coil 167 187 - -
HCH8g0201 953 Coils Coil 692 712 - -
HCH8g0201 953 MobiDBLite consensus disorder prediction 600 619 - -
HCH8g0201 953 CDD SANT_CDC5_II 55 106 IPR047240 -
HCH8g0201 953 Gene3D - 60 114 - -
HCH8g0201 953 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0201 HCH-Chr8:8317945 HCH8g1131 HCH-Chr8:46996430 1.50E-11 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33986 PF11831 Myb_Cef 7.90E-61 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0201 K12860 - csv:101206265 1476.07