Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0201 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAAATCCTTAAAGCTGCGGTTATGAAATATGGAAAAAATCAATGGGCTCGAATTTCATCTCTCCTTGTTCGCAAATCTGCTAAACAGTGTAAGGCTCGTTGGTATGAGTGGCTTGATCCCTCCATTAAAAAGACTGAGTGGACGAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCGACACAATGGAGAACTATTGCACCAATTGTTGGGCGTACACCATCCCAATGCCTTGAGCGTTATGAAAAACTTCTTGATGCTGCTTGTGTTAAGGACGAGAATTATGAACCAGGTGATGACCCGAGAAAATTACGTCCTGGAGAAATTGACCCGAACCCTGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAGAAAGAAATGCTTTCGGAAGCACGGGCACGGTTAGCGAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCCAGGAGGCTTGCCTCGCTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATAATAGGCACCGGAAGAGGAAAAGGAAGGGAATCGATTACAATGCAGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTTAGCGAGGAAGATAGACCAGTGGAACAACCGAAATTCCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGATATTGAAGCTCAATTAAGAAAACAAGATATTGCAAAGAATAAAATTTCTCAGAGACAAGATGCTCCATCAGCTGTATTGCAAGCAAATAAACTTAATGACCCAGAAATGGTGAGGAAAAGATCCAAACTTATGCTTCCTGCACCCCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGACCTTCTTGCTGGTACTGAGGGACTTGCAGAAGGAACTGGTGCTACACGAGCTCTTCTTGCAAATTATGCACAGACACCACAACAAGGAATGACACCTTTACGAACTCCACAAAGGACACCTGCTGGGAAGGGAGATGCTATAATGATGGAAGCAGAAAATCTTGCCAGGCTGAGAGAATCTCAGACTCCATTATTAGGAGGAGAGAACCCTGAGCTGCATCCTTCGGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCTAACACCAAATCCTATGCTAACACCCTCAGCAACTCCTGGTGGTGTTAGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGAATGACTCCAAAAGGAACACCTATCAGGGATGAGCTACATATCAATGAAGATACGGAAGTGCAGGATAGTTCAAAACTTGATTCTCAAAGACAAGCCAATTTAAGGAGTAATCTCCGCTTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTCATGCAACCAATTCCAGAAGATGAAGAAGAATCAGAGGAGAAGATTGAAGAAGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAGGCACGACAGCAAGCATTACTTAGGAAAAGATCAAAAGTGCTGCAGAGGGAGCTTCCTCGGCCTCCTGTTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCTCCTACTCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTCCTCGCGCTATTGGAACATGATAACGCTAAGTACCCAATTGATGAAAAAGTAAACAAGGAGAAAAAGAAAGGTTCCAAGCGTTCTGGAAATGGACCTACTGCTGCTGTCCCCACTATAGAAGAATTTGAAGAAGATGAGATGAAAGAGGCTGATCATTTGATAATAGAAGAGGTTCAGTATCTTTGTGCTGCAATGGGGCATGGAAGTGAATCCCTTGATGAATTTGTTGAAGCGCACAAAACCTGCTTGAATGATCTCATGTACTTTCCCACCAGAAATGCATACGGACTTTCCAGTGTTGCTGGAAACCTTGAGAAACTAGCGGCCCTGCAGGATGAGTTTGAGTATGTGAAAAAAAAAATGGACGAGGATACTGAGAAGGCAGTCCGGCTCGAGAAGAAGGTTAAAGTTCTCACGCATGGTTATGAGACACGGTCAAAAACAAGCCTCTGGCCGCAAATTGAGGTAACTTTCAAGCAGATGGATACTGCAGCAAAAGAGCTAGAGTGCTTTGAAGCTTTACAAAAGCAAGAGTTGTTAGCTGCTTCACACAGGATTAATGGTATCTGGGAGGATGTTCAGAAACAGAAAGAGCTGGAGATGACATTGCAGAGACGCTATGGTAATTTGGTGGCAGAATTGGAAAAGATGCAGCAAATCATGGACGAGCACAAGGCACGTGCACAGAAGGAAGAAGAAATCGCGGCAGAGAACCGTGCTCTTCAGTTGGCTGAAGCTGAGGCTGAGGCAAATCAAACTGTTGGAGAGAACCCTGAGAGATCTGAAGCCATGCCTGTATTAGTTGATCATGAAAATTCTGTTGAAAATCACGCTAGTGATGTTCCTTCTCAAGATTTCTTGGGCCCTGCAGAAGTGGCACCAGTGGTGGAAAATACGATCGATTCAGTTGATGGGACAGCTATTGAAAATGCTCCAAGTACTGATTTTGTGAATGAAGCTAAAGATGTTGAAAATCAGCAGCCTGTGGTGGAAGGTGAAAAATCAGAAGTAGATTCTACTAATCTAGATCCCACTGCTCCATCTTCTCATGGAGATGTGGAAGTCCCCCGTGGCGAAGGCGAAGGCGAAGCAATGGCCATCGCCTAG 2862 43.99 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDIEAQLRKQDIAKNKISQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGTEGLAEGTGATRALLANYAQTPQQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEILTPNPMLTPSATPGGVSLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDTEVQDSSKLDSQRQANLRSNLRLGLGNLPQPKNEYQVVMQPIPEDEEESEEKIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNGPTAAVPTIEEFEEDEMKEADHLIIEEVQYLCAAMGHGSESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNLEKLAALQDEFEYVKKKMDEDTEKAVRLEKKVKVLTHGYETRSKTSLWPQIEVTFKQMDTAAKELECFEALQKQELLAASHRINGIWEDVQKQKELEMTLQRRYGNLVAELEKMQQIMDEHKARAQKEEEIAAENRALQLAEAEAEANQTVGENPERSEAMPVLVDHENSVENHASDVPSQDFLGPAEVAPVVENTIDSVDGTAIENAPSTDFVNEAKDVENQQPVVEGEKSEVDSTNLDPTAPSSHGDVEVPRGEGEGEAMAIA 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8317945 8325319 + evm.model.ptg000008l.1334 HCH8g0201 549299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0201 953 Gene3D - 5 59 - -
HCH8g0201 953 Coils Coil 792 832 - -
HCH8g0201 953 SMART sant 58 105 IPR001005 -
HCH8g0201 953 SMART sant 6 55 IPR001005 -
HCH8g0201 953 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
HCH8g0201 953 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
HCH8g0201 953 MobiDBLite consensus disorder prediction 113 150 - -
HCH8g0201 953 MobiDBLite consensus disorder prediction 382 401 - -
HCH8g0201 953 FunFam CDC5 cell division cycle 5-like 60 120 - -
HCH8g0201 953 MobiDBLite consensus disorder prediction 157 176 - -
HCH8g0201 953 CDD SANT 10 53 IPR001005 -
HCH8g0201 953 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
HCH8g0201 953 MobiDBLite consensus disorder prediction 213 235 - -
HCH8g0201 953 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
HCH8g0201 953 Pfam Myb-like DNA-binding domain 10 70 - -
HCH8g0201 953 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 808 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
HCH8g0201 953 MobiDBLite consensus disorder prediction 910 953 - -
HCH8g0201 953 FunFam CDC5 cell division cycle 5-like 5 59 - -
HCH8g0201 953 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
HCH8g0201 953 Coils Coil 167 187 - -
HCH8g0201 953 Coils Coil 692 712 - -
HCH8g0201 953 MobiDBLite consensus disorder prediction 600 619 - -
HCH8g0201 953 CDD SANT_CDC5_II 55 106 IPR047240 -
HCH8g0201 953 Gene3D - 60 114 - -
HCH8g0201 953 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0201 K12860 - - csv:101206265 1476.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0201 HCH-Chr8:8317945 HCH8g1131 HCH-Chr8:46996430 1.50E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0201 . 1 849 MYB-Related Transcription Factor Family AT1G09770 73.1 0.0e+00 1151.0
HCH8g1131 . 185 653 MYB-Related Transcription Factor Family AT3G18100 56.6 3.9e-155 545.4
HCH8g1131 . 185 653 MYB-Related Transcription Factor Family AT3G18100 56.6 3.9e-155 545.4
HCH8g0201 . 1 849 MYB-Related Transcription Factor Family AT1G09770 73.1 0.0e+00 1151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33986 PF11831 Myb_Cef 7.90E-61 No_clan HCH TF