Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0249 ATGAAACAACATTCCTCTCCATATTATACACTTTCCTTTATAATCCTATCCCTTTTCTTTCAACAATCTCTGTGCCAGCAAGCATATATAGACAATCGACAGCTAGATTGTTTAACGAGCAGTTCAGAAACAAAAGGATTGGTTTGCAACAGCAGTGACATAGTCTCATGCGACTCCTTTCTCACGTTCCGATCGACGACCAACTACGACACCCCCGAAAGTATCGGAAAGCTACTCGATTCCGCCGCGTCCGACATCGCCTGGCTGAACAGATTTGTGTCCACAAATTACAAAATTCCCCACAACAGTTTGGTTATTGTTCCAATTACATGTCGATGCATGGGCAGCATGTATCAGCACAACAGCGGTTACACTACCGTGGAAGGTTCTGAAACTTATTTTGTAATCGCAAATGACACTTTCCAAGGCTTGACGACTTGCCAGGCGATTGCGGGGCAGAATTTCTATGATTTTAATGTTTTGAGAACAGGAATGAATTTGATGGTTCCAATGAGATGTGCTTGTCCGAGTGAAAAGCAGAGGGAGAATGGGGTGATTGCGTTGACTGTTTATATGGTTACTTGGAGAGATACGGTTCATTTAATTGCCAAGGCTTTTGGAGTCAGAAGTAAAAGTTTATTGGATGCGAATAACCTTTCGGAGAATAGTATAATATTCCCCTTTACGCCTCTTTTGGTTCCTTTGGAAGATGATTCTTGTGAAAGGAATTCTCGGTTTTCTTTTTGCTCCAAATCATGTAACTCTCAATACTCTGCCCTACGCCCGACTGACTGTACATCACCTAAATTGTTGGTTACTCTAACAGGTCTTGGAAGTGGAATAGCATTCCTGTTTTTAGTTCTCGGAGGATACAGAGTATATCGATTCCTCAAAAAAAGAAGATACAAACTCACCAACACGAAACATTTCAAGCAAAATGGCGGCCCGTTATTGCAGCAAAAACTGAATGAAAATGATAGGAAAGTGAAAATATTTACTCAGGAAGAACTGGAAAGAGCCACAGACAACTACAGTCCAAGTCGATTCCTCGGTCAAGGAGGATATGGAACGGTTTACAAAGGCATGCTCAAAGACGGCACCACAGTTGCCGTTAAAAGGTCCAAACAAATAGAAACAAATTGGATTAACCAGTTCATTAATGAAGTCGCCATCCTTTCTCAAATCAATCACAGAAATGTTGTCAAGCTTTTGGGTTGTTGTTTAGAGACCAAATTTCCTTTGCTGGTCTATGAATTTGTTCCAAATGGGACACTTTCAAACCACATCCATGACCATGATCCTACGGTATCACCACCACTTTCATGGGAAACTCGTCTTAGAATTGCTTCCGAAATTGCTGGAGCTATTTCTTACATGCATTCTGCAGCTTCAACGCCGATTTTTCATCGAGATATTAAGTCGATGAACATTCTTTTGGATGATAACTATAGTGCAAAAGTTTCCGATTTTGGGACGTCAAGGTTTGTGCCGTGTGATCGATCTCATTTAACTACGAGGGTACAGGGAACTTTAGGATACATTGATCCTGAATTTTTCAGATCAAATCAGTACACTGAAAAGAGCGATGTTTATAGTTTTGGGGTCTTGATGGTAGAGCTTTTAACAGGGAAAACACCATTCACTTTTGCAAAAGATGAAGAGGGTGGAAATCTACTAGAATACTTCATTTCACTAGAAAATGATAATCAACTTGTTGAAATTGTAGACATTACAGGACACAATGAAGAAAACTTAGAGGTTGTTCATGCCATTGCAAAACTTGCTATCAAGTGTCTGAGATTGAATGGAAAGAAGAGGCCGACTATGAAACAAGTTTATTTGGAAATAGAAGGATTGAGGAAGTCCAGTGGTTGTTCACATATTGTTGAAGGCAACCAATCTAATAGAATTTCTTCAGTTCATTCTGCAAGCAACAACTACGAATATCTTACAGATGAAAGTATCATATCTATTGACTTGGAGGCTAGATAA 1992 39.81 MKQHSSPYYTLSFIILSLFFQQSLCQQAYIDNRQLDCLTSSSETKGLVCNSSDIVSCDSFLTFRSTTNYDTPESIGKLLDSAASDIAWLNRFVSTNYKIPHNSLVIVPITCRCMGSMYQHNSGYTTVEGSETYFVIANDTFQGLTTCQAIAGQNFYDFNVLRTGMNLMVPMRCACPSEKQRENGVIALTVYMVTWRDTVHLIAKAFGVRSKSLLDANNLSENSIIFPFTPLLVPLEDDSCERNSRFSFCSKSCNSQYSALRPTDCTSPKLLVTLTGLGSGIAFLFLVLGGYRVYRFLKKRRYKLTNTKHFKQNGGPLLQQKLNENDRKVKIFTQEELERATDNYSPSRFLGQGGYGTVYKGMLKDGTTVAVKRSKQIETNWINQFINEVAILSQINHRNVVKLLGCCLETKFPLLVYEFVPNGTLSNHIHDHDPTVSPPLSWETRLRIASEIAGAISYMHSAASTPIFHRDIKSMNILLDDNYSAKVSDFGTSRFVPCDRSHLTTRVQGTLGYIDPEFFRSNQYTEKSDVYSFGVLMVELLTGKTPFTFAKDEEGGNLLEYFISLENDNQLVEIVDITGHNEENLEVVHAIAKLAIKCLRLNGKKRPTMKQVYLEIEGLRKSSGCSHIVEGNQSNRISSVHSASNNYEYLTDESIISIDLEAR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12087070 12090379 + evm.model.ptg000008l.1286 HCH8g0249 549347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0249 663 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0249 663 SUPERFAMILY Protein kinase-like (PK-like) 324 613 IPR011009 -
HCH8g0249 663 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524(InterPro)
HCH8g0249 663 Gene3D LysM domain 177 244 IPR036779 -
HCH8g0249 663 FunFam Wall-associated receptor kinase 2 317 419 - -
HCH8g0249 663 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 109 626 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH8g0249 663 CDD LysM 189 233 IPR018392 -
HCH8g0249 663 SMART serkin_6 344 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0249 663 SUPERFAMILY LysM domain 189 234 IPR036779 -
HCH8g0249 663 FunFam Wall-associated receptor kinase 2 420 639 - -
HCH8g0249 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0249 663 CDD STKc_IRAK 350 619 - -
HCH8g0249 663 Gene3D Phosphorylase Kinase; domain 1 318 419 - -
HCH8g0249 663 Gene3D Transferase(Phosphotransferase) domain 1 420 644 - -
HCH8g0249 663 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
HCH8g0249 663 Pfam Protein kinase domain 345 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0249 663 Pfam LysM domain 191 234 IPR018392 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0508 HCH-Chr13:3565441 HCH8g0249 HCH-Chr8:12087070 1.80E-77 dispersed
HCH8g0249 HCH-Chr8:12087070 HCH8g0251 HCH-Chr8:12225521 4.50E-249 dispersed
HCH8g0249 HCH-Chr8:12087070 HCH8g0250 HCH-Chr8:12147059 4.20E-247 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81681 PF00069 Pkinase 5.70E-52 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0249 - - - 0.0