Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0250 ATGGAGCAATATTCCTCTTCATATTACACACTCTCTATACTTTCTTTCATTATCCTATCCCTTTTCTTTCAACCATCTCTTTGCCAGCAACCCTATCTAAACAATCAACAGTTAGATTGCTCAAACAGCAGTTCAATATCAAAAGGGTACGTTTGCAATAGTGTCGTAAACTCATGTGAATCCTTTCTAACCTTCCGATCAAGGCCGGACTACGACACAGCTGATAGCATCGCGATGTTGCTCGATTCGAGAGCCTCCGACATCGCCTGGTTAAACAGATTTGACTCGACAAATTACCGAATTCCCCACGAGAATCGTGTAATTGTTCCGATTCCTTGCCGATGTTGGGGCAGCATATATCAACACGACAGTCGTTACACAGCGGAGGATTCTGATACATATTTTGAGATAGCAAATAACACATATCAAGGCTTGACGACTTGCCAGGCAATTGACGGGCAGAATTTCTATGAAGATAGTTTCATTCCGGCAGGAAGTGAGCTGATGGTTCCGGTGAGATGCGCTTGTCCGACGGGAACGCAGACGGTGAATGGGGTTATTGCATTGATAGCTTATATGGTGGAGTCTGGAGATACGGTTCATTCAATTGCCAATGCTTTTGGGGTTAGAATGGAGAGTTTATTGGAAGCGAATGAGCTTTATGAGAATAGTAGGGTCTTCCCCTCAACGCCTCTGTTGGTTCCTTTGGAAGAACATTGTTGCCAAGTCAATCCTCGGTTTTATTTCTGCACCAAATCGTGTAATTCTGACTACTCTGACTGCAAATCAACGAATTTGTTGGTTACTCTAGTAGGTGTAGGAAGTGGAATAGCATTCTTGGTCTTTATTCTTCTTGTATACAAAGTATATAAGTACCTAAAGAGAAGAAGACAACAGTTTTTCAAAGAGAAGTTTTTCAAGCAAAATGGCGGTATCTTGCTGCTGCAAAAACTAAATGGAAGCGGGGAGAAAACAAAAATATTCACTGCAGAAGAATTAGAAAGAGCAACAGATAATTACAATCAGAGCCGATTTCTCGGTCAAGGAGGCTATGGAACAGTTTACAAAGGCATGCTTCAAGATGGTGTAATAGTTGCTGTGAAAAAGTCAAAACAAATGGAGAAAAATTGGATCGAACAATTCATTAATGAAGTTGTTGTCCTTTCTCAAATCAATCATAGAAATGTTGTCAAGCTTCTTGGTTGTTGTTTGGAGACTGAGCTTCCTTTGCTAGTTTATGAATATGTTCCAAATGGGAAACTCTCTAACCACATTTACAAGAAAAATTTGGAGGATTCATCATCTCTATCTTGGGAAAGTCGTCTTAGAATTGCTTGTGAAGTGGCTGGAGCAATCGCTTATATGCATTCTGCGGCTTCAATTCCTATTTTTCATCGAGATATCAAGTCATCTAACATACTGTTGGATGAAAATTATAGTGCGAAAATTTCCGATTTCGGGACGTCGAGATTTATGCCTGATGATCAATCTCATTTGACAACGAATGTACAAGGAACTTTAGGTTACATGGATCCTGAATATTTCAGGTCAAGCAAATTTACTGAGAAAAGCGATGTCTATAGCTTTGGAGTTTTGATGGTAGAGCTTTTAAGTGGAAAACAACCCTTTTCTTATGCAAAAGAGGAGGGTAAGAATTTGTTGGAGCACTTCATTTTCATGGATAAGAAAAACCAACTTGTTGAAATTCTAGATAGTGAAATGGCTAGAGAAGAGAACATTGATGTGATTCTTTCTGTTGCAAAGCTTGCCACAAGATGTTTGAAAATGAATGGGAGAAAAAGACCTACAATGAAACAAGTGTTTTTGGAGCTAGAAGGACTAAGAAAATCTGAAGATCATTCTCTGGAAATTGTTGAAGAAAGTGAGACATTTGAAGACCTTTCAACTCAAGCTACAAGTACCAGTGATGATGAGGTTATGGATGATAGCTTCAGCCTTTGA 1962 39.3 MEQYSSSYYTLSILSFIILSLFFQPSLCQQPYLNNQQLDCSNSSSISKGYVCNSVVNSCESFLTFRSRPDYDTADSIAMLLDSRASDIAWLNRFDSTNYRIPHENRVIVPIPCRCWGSIYQHDSRYTAEDSDTYFEIANNTYQGLTTCQAIDGQNFYEDSFIPAGSELMVPVRCACPTGTQTVNGVIALIAYMVESGDTVHSIANAFGVRMESLLEANELYENSRVFPSTPLLVPLEEHCCQVNPRFYFCTKSCNSDYSDCKSTNLLVTLVGVGSGIAFLVFILLVYKVYKYLKRRRQQFFKEKFFKQNGGILLLQKLNGSGEKTKIFTAEELERATDNYNQSRFLGQGGYGTVYKGMLQDGVIVAVKKSKQMEKNWIEQFINEVVVLSQINHRNVVKLLGCCLETELPLLVYEYVPNGKLSNHIYKKNLEDSSSLSWESRLRIACEVAGAIAYMHSAASIPIFHRDIKSSNILLDENYSAKISDFGTSRFMPDDQSHLTTNVQGTLGYMDPEYFRSSKFTEKSDVYSFGVLMVELLSGKQPFSYAKEEGKNLLEHFIFMDKKNQLVEILDSEMAREENIDVILSVAKLATRCLKMNGRKRPTMKQVFLELEGLRKSEDHSLEIVEESETFEDLSTQATSTSDDEVMDDSFSL 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12147059 12150103 + evm.model.ptg000008l.1285 HCH8g0250 549348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0250 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0250 653 CDD LysM 192 228 IPR018392 -
HCH8g0250 653 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 12 617 IPR052611 -
HCH8g0250 653 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0250 653 FunFam Wall-associated receptor kinase 2 416 633 - -
HCH8g0250 653 Pfam LysM domain 192 235 IPR018392 -
HCH8g0250 653 ProSitePatterns Protein kinases ATP-binding region signature. 346 369 IPR017441 GO:0005524(InterPro)
HCH8g0250 653 Gene3D Transferase(Phosphotransferase) domain 1 416 639 - -
HCH8g0250 653 ProSiteProfiles LysM domain profile. 190 234 IPR018392 -
HCH8g0250 653 SMART serkin_6 340 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0250 653 SUPERFAMILY Protein kinase-like (PK-like) 325 611 IPR011009 -
HCH8g0250 653 CDD STKc_IRAK 346 614 - -
HCH8g0250 653 FunFam Wall-associated receptor kinase 2 313 415 - -
HCH8g0250 653 MobiDBLite consensus disorder prediction 628 653 - -
HCH8g0250 653 Gene3D Phosphorylase Kinase; domain 1 316 415 - -
HCH8g0250 653 ProSiteProfiles Protein kinase domain profile. 340 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0250 653 Gene3D LysM domain 180 241 IPR036779 -
HCH8g0250 653 MobiDBLite consensus disorder prediction 631 653 - -
HCH8g0250 653 SMART LysM_2 191 235 IPR018392 -
HCH8g0250 653 SUPERFAMILY LysM domain 190 235 IPR036779 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0174 HCH-Chr13:1172120 HCH8g0250 HCH-Chr8:12147059 2.90E-103 dispersed
HCH4g0694 HCH-Chr4:4505817 HCH8g0250 HCH-Chr8:12147059 3.30E-68 dispersed
HCH5g1259 HCH-Chr5:46019383 HCH8g0250 HCH-Chr8:12147059 1.20E-225 dispersed
HCH5g1262 HCH-Chr5:46375084 HCH8g0250 HCH-Chr8:12147059 4.60E-33 dispersed
HCH7g1273 HCH-Chr7:45633244 HCH8g0250 HCH-Chr8:12147059 2.60E-52 dispersed
HCH8g0250 HCH-Chr8:12147059 HCH9g0381 HCH-Chr9:2423616 5.50E-66 dispersed
HCH8g0249 HCH-Chr8:12087070 HCH8g0250 HCH-Chr8:12147059 4.20E-247 tandem
HCH8g0250 HCH-Chr8:12147059 HCH8g0251 HCH-Chr8:12225521 1.50E-183 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81682 PF00069 Pkinase 2.60E-55 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0250 - - - 0.0