Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0251 ATGGTGTCATCTTTTCCATATTGCTATTTGATCCTCTTCCTTTCACTCTTCCCTTATGAATTCCTTTGCCAACAAAATTATCTCGGAGAAGAAATCTGCTCAACGAATTATCCTTATGAATATTCTTGTGATGGCACCAGCGGATGCATCTCTTATTTGAGCTTTACACCAAGGCCACCCTATGACACACAAACCAAAATACAAAATCTCCTTTCTTCCCAATCACAACCTCAATCCCCTCCAAAGAACTACACATACACATATCCTACAAGACACGACTCGATCATCGTTGTTCCGGTTTCGTGTTTATGTTTCGGTTTAACTCATCAAGCTAGAACTGTTTACGTTATCAAGAGTGGCGACACTTATGAAAGGGTGGCAAATGATGTTTTTCAAGGCCTAACAAGTTGCTCTACGCTGAGAAATCTCAACAATGAAGTTTTCGATGAATTATCGAATTTCGAAGGCGGAGAACTAATCGTTCCGTTGAGATGCGCTTGCCCTACTGAGATGATGAATGGGGTTATATACTTGGTTATCTATATGGTACAACCAAATGATACTATTTCTTCCATTGCAATGAGTTTTGGTGTTGATTTAGTAACCTTATTAAAAGTCAACAAGCTGCAAAATTCTAGCTCCCCAATCTACCCATTCACACCTATTTTATTACCTTTTAAAAAAGAAGATTGCAAGGAAAATTCTCAGTTTCACTTCTGCCACTCGACCGATGAGGAAGTCGGGATCACCGAATTGCCTCACAAATCACCTGATTATGAAGGGAAACAAAATAATCCAGTCCGTTTGGTAATTCTTACTGCAACAGCTGTTGGAGGTGGAATAGCATTTTTGATCTTAGTTCTCGGAGGATACAGAGGATATAAACTACTGAAGGAAAGAAGATACAAACTCACCAAAGCGAGATTTTTCAAGCAAAATGGTGGCATATTATTGCAGCAAAAGCTCAATGAAAATGCTAGAAGAATCAAAATATTTACTCAGGAAGAACTGGAAAAAGCCACAGACAACTACAGTCGAAATCGATTTCTAGGTCAAGGAGGATATGGAACAGTTTTCAAAGGCATGCTCAAAGACGGCGCCACAGTTGCAGTTAAAAGGTCAAAACAAATCGAAACAAATTGGATTAACCAGTTCATTAATGAAGTCGCCATCCTTTCTCAAATCAATCACAGAAATGTTGTCAAGCTTTTGGGTTGTTGTTTAGAGACCAAATTTCCTTTGCTGGTCTATGAATTTGTTCCAAATGGGACACTTTCATATCATATCCACAAACAGGACTCTATCCTATCACCTCCACTTTCATGGGAAACTCGTCTAAGAATTGCTTCTGAAATTGCTGGAGCTATTTCTTACATGCATTCTGCAGCTTCAACCCCGATTTTTCATCGAGATATTAAGTCGATGAACATTCTTTTGGATGATAATTATAGTGCAAAAGTTTCCGATTTCGGGACGTCAAGGTTTGTGCCGTGTGATCGATCTCATTTAACTACAAGGGTACAAGGAACTTTAGGATACATTGATCCTGAATTTTTCAGGTCAAATCAGTACACTGAGAAGAGCGATGTTTATAGTTTTGGGGTGTTGATGGTAGAGCTTTTAACAGGGAAAACACCATTCACTTTTGCAAAAGATGAAGAGGGTGGAAATCTACTAGAATACTTCATTTCACTAGAAAATGATAATCAACTTGTTGAAATTGTAGACATTACAGGACACAATGAAGAAAACTTAGAGGTTGTTCATGCCATTGCAAAACTTGCTATCAAGTGTCTGAGATTGAATGGAAAGAAGAGGCCGACTATGAAACAAGTTTATTTGGAAATAGAAGGATTGAGGAAGTCCAGTGGTTGTTCACATATTGTTGAAGGCAACCAATCTAATAGAATTTCTTCAGTTCATTCTGCAAGCAACAACTACGAATATCTTACAGATGAAAGTATCATATCTATTGACTTGGAGGCTAGATAA 1992 38.1 MVSSFPYCYLILFLSLFPYEFLCQQNYLGEEICSTNYPYEYSCDGTSGCISYLSFTPRPPYDTQTKIQNLLSSQSQPQSPPKNYTYTYPTRHDSIIVVPVSCLCFGLTHQARTVYVIKSGDTYERVANDVFQGLTSCSTLRNLNNEVFDELSNFEGGELIVPLRCACPTEMMNGVIYLVIYMVQPNDTISSIAMSFGVDLVTLLKVNKLQNSSSPIYPFTPILLPFKKEDCKENSQFHFCHSTDEEVGITELPHKSPDYEGKQNNPVRLVILTATAVGGGIAFLILVLGGYRGYKLLKERRYKLTKARFFKQNGGILLQQKLNENARRIKIFTQEELEKATDNYSRNRFLGQGGYGTVFKGMLKDGATVAVKRSKQIETNWINQFINEVAILSQINHRNVVKLLGCCLETKFPLLVYEFVPNGTLSYHIHKQDSILSPPLSWETRLRIASEIAGAISYMHSAASTPIFHRDIKSMNILLDDNYSAKVSDFGTSRFVPCDRSHLTTRVQGTLGYIDPEFFRSNQYTEKSDVYSFGVLMVELLTGKTPFTFAKDEEGGNLLEYFISLENDNQLVEIVDITGHNEENLEVVHAIAKLAIKCLRLNGKKRPTMKQVYLEIEGLRKSSGCSHIVEGNQSNRISSVHSASNNYEYLTDESIISIDLEAR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12225521 12228833 - evm.model.ptg000008l.1284 HCH8g0251 549349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0251 663 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524(InterPro)
HCH8g0251 663 SMART serkin_6 344 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0251 663 Gene3D Transferase(Phosphotransferase) domain 1 420 644 - -
HCH8g0251 663 Pfam Protein kinase domain 344 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0251 663 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0251 663 Gene3D Phosphorylase Kinase; domain 1 316 419 - -
HCH8g0251 663 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 39 626 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH8g0251 663 FunFam Wall-associated receptor kinase 2 420 639 - -
HCH8g0251 663 CDD LysM 179 218 IPR018392 -
HCH8g0251 663 SUPERFAMILY Protein kinase-like (PK-like) 325 613 IPR011009 -
HCH8g0251 663 Gene3D LysM domain 177 236 IPR036779 -
HCH8g0251 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0251 663 CDD STKc_IRAK 350 619 - -
HCH8g0251 663 SUPERFAMILY LysM domain 179 225 IPR036779 -
HCH8g0251 663 SMART LysM_2 180 225 IPR018392 -
HCH8g0251 663 SMART LysM_2 114 162 IPR018392 -
HCH8g0251 663 Pfam LysM domain 115 145 IPR018392 -
HCH8g0251 663 Pfam LysM domain 181 225 IPR018392 -
HCH8g0251 663 Coils Coil 323 343 - -
HCH8g0251 663 FunFam Wall-associated receptor kinase 2 317 419 - -
HCH8g0251 663 ProSiteProfiles LysM domain profile. 179 224 IPR018392 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0175 HCH-Chr13:1183446 HCH8g0251 HCH-Chr8:12225521 2.50E-100 dispersed
HCH8g0249 HCH-Chr8:12087070 HCH8g0251 HCH-Chr8:12225521 4.50E-249 dispersed
HCH8g0251 HCH-Chr8:12225521 HCH13g0671 HCH-Chr13:5365880 5.10E-59 dispersed
HCH8g0250 HCH-Chr8:12147059 HCH8g0251 HCH-Chr8:12225521 1.50E-183 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81683 PF00069 Pkinase 1.10E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0251 - - - 0.0