Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0268 ATGGAGTTCGATTCTGGAATACCTATGTCTGTGACGGAGGGACACTCCTCTACCCTCACAGTCTCACCATCTTTGCGCCAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAATTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCTGTGCGACCTGGAGAGCCAGATTGTTCCTATTACATCAGAACAGGCCTCTGTAGATTTGGAGCTACGTGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAAGGAGAATTCCCAGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGTGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTCCGCCCGAATGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATACCACCATCCTCAACCAACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTATCCAACTGTACAATCACCAACTCCTGGTCAGCAGTCATATCCAGGGGGAAGTACTAATTGGTCAAGGGCCTCCTTTATTCCCAGTCCCCGATGGCAAGGCCCTTCAAGTTATGCGTCATTAATTTTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTTAACGATCAGCTGGGATCAGTTTCATCTTCAGAAAGTCCTCAACAAATGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGCCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCTGTTTGTCGGTTTCATCATCCTCGAGAGAGAATAATTCCTACTCCAGATTGTGTTTTGAGTCCAATAGGCCTGCCATTACGTCCGGGAGAACCTTTGTGCATCTTCTATTCTCGTTATGGCATCTGCAAGTTTGGACCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATATAATCTCTCTGCAGCATCATCTGCCAACACCCCAGTACAGCATTTGTTTGGATCGTCTTCAGGAACAACTGCACTGAATTTGTCATCTGAAGGGCTAGTTGAAGGAGGGCCTGCGAAGCCGAGGAGAATTTCACTCTCAGAGACTAGAGATATGCCTTCTGATGATGAAAATATTGACACGGAGGGCTGA 1221 44.8 MEFDSGIPMSVTEGHSSTLTVSPSLRQGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNETECAYYLRTGQCKFGNTCKYHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQMRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERIIPTPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANTPVQHLFGSSSGTTALNLSSEGLVEGGPAKPRRISLSETRDMPSDDENIDTEG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14505171 14542656 - evm.model.ptg000008l.1267 HCH8g0268 549366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0268 406 ProSiteProfiles Zinc finger C3H1-type profile. 55 83 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 Gene3D - 256 341 - -
HCH8g0268 406 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 SUPERFAMILY CCCH zinc finger 104 129 IPR036855 GO:0046872(InterPro)
HCH8g0268 406 SUPERFAMILY CCCH zinc finger 147 174 IPR036855 GO:0046872(InterPro)
HCH8g0268 406 MobiDBLite consensus disorder prediction 1 21 - -
HCH8g0268 406 SUPERFAMILY CCCH zinc finger 270 295 IPR036855 GO:0046872(InterPro)
HCH8g0268 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 82 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 127 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 293 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 339 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 173 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 Gene3D - 132 182 - -
HCH8g0268 406 SMART c3hfinal6 100 127 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 SMART c3hfinal6 55 82 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 SMART c3hfinal6 146 173 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 SMART c3hfinal6 312 339 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 SMART c3hfinal6 266 293 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 FunFam Zinc finger nuclease 2 54 131 - -
HCH8g0268 406 FunFam CCCH type zinc finger protein 264 349 - -
HCH8g0268 406 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 SUPERFAMILY CCCH zinc finger 315 339 IPR036855 GO:0046872(InterPro)
HCH8g0268 406 ProSiteProfiles Zinc finger C3H1-type profile. 312 340 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 Gene3D - 55 131 - -
HCH8g0268 406 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872(InterPro)
HCH8g0268 406 MobiDBLite consensus disorder prediction 371 406 - -
HCH8g0268 406 SUPERFAMILY CCCH zinc finger 60 83 IPR036855 GO:0046872(InterPro)
HCH8g0268 406 PANTHER PROTEIN PHOSPHATASE RELATED 45 340 IPR050974 GO:0003729(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0402 HCH-Chr3:2620529 HCH8g0268 HCH-Chr8:14505171 4.50E-25 dispersed
HCH6g1674 HCH-Chr6:49580153 HCH8g0268 HCH-Chr8:14505171 1.80E-21 dispersed
HCH7g0009 HCH-Chr7:61916 HCH8g0268 HCH-Chr8:14505171 3.30E-13 dispersed
HCH8g0268 HCH-Chr8:14505171 HCH7g1110 HCH-Chr7:43765982 3.00E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33988 PF00642 zf-CCCH 2.80E-10 CL0537 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0268 - - - 0.0