Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0268 | ATGGAGTTCGATTCTGGAATACCTATGTCTGTGACGGAGGGACACTCCTCTACCCTCACAGTCTCACCATCTTTGCGCCAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAATTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCTGTGCGACCTGGAGAGCCAGATTGTTCCTATTACATCAGAACAGGCCTCTGTAGATTTGGAGCTACGTGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAAGGAGAATTCCCAGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGTGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTCCGCCCGAATGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATACCACCATCCTCAACCAACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTATCCAACTGTACAATCACCAACTCCTGGTCAGCAGTCATATCCAGGGGGAAGTACTAATTGGTCAAGGGCCTCCTTTATTCCCAGTCCCCGATGGCAAGGCCCTTCAAGTTATGCGTCATTAATTTTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTTAACGATCAGCTGGGATCAGTTTCATCTTCAGAAAGTCCTCAACAAATGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGCCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCTGTTTGTCGGTTTCATCATCCTCGAGAGAGAATAATTCCTACTCCAGATTGTGTTTTGAGTCCAATAGGCCTGCCATTACGTCCGGGAGAACCTTTGTGCATCTTCTATTCTCGTTATGGCATCTGCAAGTTTGGACCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATATAATCTCTCTGCAGCATCATCTGCCAACACCCCAGTACAGCATTTGTTTGGATCGTCTTCAGGAACAACTGCACTGAATTTGTCATCTGAAGGGCTAGTTGAAGGAGGGCCTGCGAAGCCGAGGAGAATTTCACTCTCAGAGACTAGAGATATGCCTTCTGATGATGAAAATATTGACACGGAGGGCTGA | 1221 | 44.8 | MEFDSGIPMSVTEGHSSTLTVSPSLRQGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNETECAYYLRTGQCKFGNTCKYHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQMRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERIIPTPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANTPVQHLFGSSSGTTALNLSSEGLVEGGPAKPRRISLSETRDMPSDDENIDTEG | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 14505171 | 14542656 | - | evm.model.ptg000008l.1267 | HCH8g0268 | 549366 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0268 | 406 | ProSiteProfiles | Zinc finger C3H1-type profile. | 55 | 83 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Gene3D | - | 256 | 341 | - | - | |
HCH8g0268 | 406 | ProSiteProfiles | Zinc finger C3H1-type profile. | 146 | 174 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | SUPERFAMILY | CCCH zinc finger | 104 | 129 | IPR036855 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | SUPERFAMILY | CCCH zinc finger | 147 | 174 | IPR036855 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
HCH8g0268 | 406 | SUPERFAMILY | CCCH zinc finger | 270 | 295 | IPR036855 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 56 | 82 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 103 | 127 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 267 | 293 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 313 | 339 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 149 | 173 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Gene3D | - | 132 | 182 | - | - | |
HCH8g0268 | 406 | SMART | c3hfinal6 | 100 | 127 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | SMART | c3hfinal6 | 55 | 82 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | SMART | c3hfinal6 | 146 | 173 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | SMART | c3hfinal6 | 312 | 339 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | SMART | c3hfinal6 | 266 | 293 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | FunFam | Zinc finger nuclease 2 | 54 | 131 | - | - | |
HCH8g0268 | 406 | FunFam | CCCH type zinc finger protein | 264 | 349 | - | - | |
HCH8g0268 | 406 | ProSiteProfiles | Zinc finger C3H1-type profile. | 100 | 128 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | SUPERFAMILY | CCCH zinc finger | 315 | 339 | IPR036855 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | ProSiteProfiles | Zinc finger C3H1-type profile. | 312 | 340 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | Gene3D | - | 55 | 131 | - | - | |
HCH8g0268 | 406 | ProSiteProfiles | Zinc finger C3H1-type profile. | 266 | 294 | IPR000571 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | MobiDBLite | consensus disorder prediction | 371 | 406 | - | - | |
HCH8g0268 | 406 | SUPERFAMILY | CCCH zinc finger | 60 | 83 | IPR036855 | GO:0046872(InterPro) | |
HCH8g0268 | 406 | PANTHER | PROTEIN PHOSPHATASE RELATED | 45 | 340 | IPR050974 | GO:0003729(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0402 | HCH-Chr3:2620529 | HCH8g0268 | HCH-Chr8:14505171 | 4.50E-25 | dispersed | |
HCH6g1674 | HCH-Chr6:49580153 | HCH8g0268 | HCH-Chr8:14505171 | 1.80E-21 | dispersed | |
HCH7g0009 | HCH-Chr7:61916 | HCH8g0268 | HCH-Chr8:14505171 | 3.30E-13 | dispersed | |
HCH8g0268 | HCH-Chr8:14505171 | HCH7g1110 | HCH-Chr7:43765982 | 3.00E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33988 | PF00642 | zf-CCCH | 2.80E-10 | CL0537 | HCH | TF |
Pathway information
