Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0272 ATGAAGTTAGTAGTAAAGGATGACGATATCGACGATGTTCTTGTTCCGCCAACGAATTTCTCTATGGTTGAAGACGGCATTTTTAGATCCGGATTTCCTCAGCCTTCCAATTTTTCTTTTCTCAATAACCTAAATCTCCGTTCTATCATATATCTGTGTCCAGAACCGTACCCAGAAGAAAATTTGGAGTTTCTTCGAGCTCATAATATTAAGCTTTTTCAATTCAAAATTGAAGGGAAAAAGGAGCCTATTCCAAAGGATGATATCACGGGAGCTCTAAAAGTTCTAATTGATGTGAGAAATCACCCCATTCTGATCCACTGCAAGCGCGGGAAGCATCGAACGGGCTCTGTAGTAGGCTGCCTAAGAAAATTTCAGAATTGGTGCTTGTCTTCTGTGTTTGAAGAGTACCAGTGTTTTGCTGGTGTGAAATCGAGGGCATCGGATTTACAATTCATTGAGACATTTGATGTTGTGTCCCTGAGGCAATGTGTTTACAGCATTTTATATCAGTATCAAGGTTACAGTTCAAATAAGAGGAGACTTCTCTACAGAGAAGAAAATTTGCAGAAACCCCAAACGACATCGGTTTAG 594 39.9 MKLVVKDDDIDDVLVPPTNFSMVEDGIFRSGFPQPSNFSFLNNLNLRSIIYLCPEPYPEENLEFLRAHNIKLFQFKIEGKKEPIPKDDITGALKVLIDVRNHPILIHCKRGKHRTGSVVGCLRKFQNWCLSSVFEEYQCFAGVKSRASDLQFIETFDVVSLRQCVYSILYQYQGYSSNKRRLLYREENLQKPQTTSV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14877322 14878502 + evm.model.ptg000008l.1263 HCH8g0272 549370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0272 197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 171 IPR020422 GO:0006470(InterPro)
HCH8g0272 197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 157 IPR029021 -
HCH8g0272 197 ProSitePatterns Tyrosine specific protein phosphatases active site. 106 116 IPR016130 GO:0016311(InterPro)
HCH8g0272 197 Pfam Tyrosine phosphatase family 14 158 IPR004861 -
HCH8g0272 197 FunFam probable tyrosine-protein phosphatase At1g05000 13 160 - -
HCH8g0272 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 188 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
HCH8g0272 197 CDD PFA-DSP_Siw14 16 157 - -
HCH8g0272 197 Gene3D Protein tyrosine phosphatase superfamily 13 160 IPR029021 -
HCH8g0272 197 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
HCH8g0272 197 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
HCH8g0272 197 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0272 K18045 - - csv:101211082 338.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0082 HCH-Chr7:549090 HCH8g0272 HCH-Chr8:14877322 3.80E-54 dispersed
HCH8g0272 HCH-Chr8:14877322 HCH2g0875 HCH-Chr2:52313633 3.90E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008556 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35