Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0272 | ATGAAGTTAGTAGTAAAGGATGACGATATCGACGATGTTCTTGTTCCGCCAACGAATTTCTCTATGGTTGAAGACGGCATTTTTAGATCCGGATTTCCTCAGCCTTCCAATTTTTCTTTTCTCAATAACCTAAATCTCCGTTCTATCATATATCTGTGTCCAGAACCGTACCCAGAAGAAAATTTGGAGTTTCTTCGAGCTCATAATATTAAGCTTTTTCAATTCAAAATTGAAGGGAAAAAGGAGCCTATTCCAAAGGATGATATCACGGGAGCTCTAAAAGTTCTAATTGATGTGAGAAATCACCCCATTCTGATCCACTGCAAGCGCGGGAAGCATCGAACGGGCTCTGTAGTAGGCTGCCTAAGAAAATTTCAGAATTGGTGCTTGTCTTCTGTGTTTGAAGAGTACCAGTGTTTTGCTGGTGTGAAATCGAGGGCATCGGATTTACAATTCATTGAGACATTTGATGTTGTGTCCCTGAGGCAATGTGTTTACAGCATTTTATATCAGTATCAAGGTTACAGTTCAAATAAGAGGAGACTTCTCTACAGAGAAGAAAATTTGCAGAAACCCCAAACGACATCGGTTTAG | 594 | 39.9 | MKLVVKDDDIDDVLVPPTNFSMVEDGIFRSGFPQPSNFSFLNNLNLRSIIYLCPEPYPEENLEFLRAHNIKLFQFKIEGKKEPIPKDDITGALKVLIDVRNHPILIHCKRGKHRTGSVVGCLRKFQNWCLSSVFEEYQCFAGVKSRASDLQFIETFDVVSLRQCVYSILYQYQGYSSNKRRLLYREENLQKPQTTSV | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 14877322 | 14878502 | + | evm.model.ptg000008l.1263 | HCH8g0272 | 549370 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0272 | 197 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 19 | 171 | IPR020422 | GO:0006470(InterPro) | |
HCH8g0272 | 197 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 14 | 157 | IPR029021 | - | |
HCH8g0272 | 197 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 106 | 116 | IPR016130 | GO:0016311(InterPro) | |
HCH8g0272 | 197 | Pfam | Tyrosine phosphatase family | 14 | 158 | IPR004861 | - | |
HCH8g0272 | 197 | FunFam | probable tyrosine-protein phosphatase At1g05000 | 13 | 160 | - | - | |
HCH8g0272 | 197 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE | 13 | 188 | - | GO:0005737(PANTHER)|GO:0016791(PANTHER) | |
HCH8g0272 | 197 | CDD | PFA-DSP_Siw14 | 16 | 157 | - | - | |
HCH8g0272 | 197 | Gene3D | Protein tyrosine phosphatase superfamily | 13 | 160 | IPR029021 | - | |
HCH8g0272 | 197 | PRINTS | Plant and fungal dual specificity phosphatase signature | 14 | 31 | IPR020428 | GO:0016791(InterPro) | |
HCH8g0272 | 197 | PRINTS | Plant and fungal dual specificity phosphatase signature | 51 | 64 | IPR020428 | GO:0016791(InterPro) | |
HCH8g0272 | 197 | PRINTS | Plant and fungal dual specificity phosphatase signature | 70 | 84 | IPR020428 | GO:0016791(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH7g0082 | HCH-Chr7:549090 | HCH8g0272 | HCH-Chr8:14877322 | 3.80E-54 | dispersed | |
HCH8g0272 | HCH-Chr8:14877322 | HCH2g0875 | HCH-Chr2:52313633 | 3.90E-55 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g0272 | K18045 | - | csv:101211082 | 338.191 |