Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0272 ATGAAGTTAGTAGTAAAGGATGACGATATCGACGATGTTCTTGTTCCGCCAACGAATTTCTCTATGGTTGAAGACGGCATTTTTAGATCCGGATTTCCTCAGCCTTCCAATTTTTCTTTTCTCAATAACCTAAATCTCCGTTCTATCATATATCTGTGTCCAGAACCGTACCCAGAAGAAAATTTGGAGTTTCTTCGAGCTCATAATATTAAGCTTTTTCAATTCAAAATTGAAGGGAAAAAGGAGCCTATTCCAAAGGATGATATCACGGGAGCTCTAAAAGTTCTAATTGATGTGAGAAATCACCCCATTCTGATCCACTGCAAGCGCGGGAAGCATCGAACGGGCTCTGTAGTAGGCTGCCTAAGAAAATTTCAGAATTGGTGCTTGTCTTCTGTGTTTGAAGAGTACCAGTGTTTTGCTGGTGTGAAATCGAGGGCATCGGATTTACAATTCATTGAGACATTTGATGTTGTGTCCCTGAGGCAATGTGTTTACAGCATTTTATATCAGTATCAAGGTTACAGTTCAAATAAGAGGAGACTTCTCTACAGAGAAGAAAATTTGCAGAAACCCCAAACGACATCGGTTTAG 594 39.9 MKLVVKDDDIDDVLVPPTNFSMVEDGIFRSGFPQPSNFSFLNNLNLRSIIYLCPEPYPEENLEFLRAHNIKLFQFKIEGKKEPIPKDDITGALKVLIDVRNHPILIHCKRGKHRTGSVVGCLRKFQNWCLSSVFEEYQCFAGVKSRASDLQFIETFDVVSLRQCVYSILYQYQGYSSNKRRLLYREENLQKPQTTSV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14877322 14878502 + evm.model.ptg000008l.1263 HCH8g0272 549370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0272 197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 171 IPR020422 GO:0006470(InterPro)
HCH8g0272 197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 157 IPR029021 -
HCH8g0272 197 ProSitePatterns Tyrosine specific protein phosphatases active site. 106 116 IPR016130 GO:0016311(InterPro)
HCH8g0272 197 Pfam Tyrosine phosphatase family 14 158 IPR004861 -
HCH8g0272 197 FunFam probable tyrosine-protein phosphatase At1g05000 13 160 - -
HCH8g0272 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 188 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
HCH8g0272 197 CDD PFA-DSP_Siw14 16 157 - -
HCH8g0272 197 Gene3D Protein tyrosine phosphatase superfamily 13 160 IPR029021 -
HCH8g0272 197 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
HCH8g0272 197 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
HCH8g0272 197 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0082 HCH-Chr7:549090 HCH8g0272 HCH-Chr8:14877322 3.80E-54 dispersed
HCH8g0272 HCH-Chr8:14877322 HCH2g0875 HCH-Chr2:52313633 3.90E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0272 K18045 - csv:101211082 338.191