Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0281 ATGGGGTCCTGCTTGTCTACTGGAAGCAGGAGTGCTATGCCTGCTCCTCAAGTAGTATCTCCTGTGCTAGGAATAAGGAAGCAGAATAAATTGGAATCAGAGAATTCTTTGTTTGATGAGCATCAGAGTGAAGCAACGGTGCATCGAGTTCCCGGTAGGATGTTCCTGAATGGCTCTAGTGAAGTTGCTTCACTTTATACTCAACAGGGAAAGAAAGGGACTAACCAAGATGCCATGATTGTTTGGGAGAATTTTGGCTCGAGAGCGGATACATTATTCTGTGGAGTTTTTGATGGCCATGGTCCACATGGTCATTTGGTGGCAAAAAGAGTGAGGGATTCTCTTCCTTTAAAACTGACTGCACATTGGGAAGCTAAGGCAACCAATAAGGATGTTTCAAAAGAGATCAGTTGTAAAACAGGTGGTGGAAACTCTGAAGATTCTGCCTTAGAAACTACTTCAAGGGAAACTCGTAAGGGAATTGACAACCACCCGGAAATTTTTGGAAAACTGAAAGAATCATTTCTGAAGGCTTTTAAGGTGATGGATTGGGAACTAAGAATGCAACAGAGTATTGATTGCTTTAGTAGTGGGACAACGGCAGTAGCTCTCTTGAAGCAGGGTCGAGACCTTGTAATTGGGAACATCGGGGACTCGAGAGCTGTGTTATGTACAAGAGATAGAGATAATTCTCTTGTAGCAGTTCAGCTGACCGTAGATCTCAAGCCAGATATACCAGCGGAAGCCGAGAGAATTCTCAAATGCAAGGGTCGTGTTTTTGCCCTCGAGGGTGAACCAGAGGTTGCTAGAGTATGGCTTCCAAACAATGACTCCCCGGGCCTGTCTATGGCACGGGCATTTGGAGACTTTTGCCTCAAGGATTTTGGTGTGATTTCTGTTCCTGAAATATCATATCGGCTGCTGACTGAGAAGGATGAGTTTATAGTTTTGGCTACAGATGGAATTTGGAATGTTCTCTCTAACAAAGAGGTAGTGGATATTGTAGCATCGGCTCCAATACGTTCTGCAGCAAGATCGTTGGTCGAGTCTGCTGTTAAAGCGTGGAGATTTAAATCTCCTTCTTCAAGCATTGATGATTGTGCTGTTGTGTGCATCTTCCTTGACTCTATGATCTCTCAGGCACAACTGGTTTAA 1155 44.07 MGSCLSTGSRSAMPAPQVVSPVLGIRKQNKLESENSLFDEHQSEATVHRVPGRMFLNGSSEVASLYTQQGKKGTNQDAMIVWENFGSRADTLFCGVFDGHGPHGHLVAKRVRDSLPLKLTAHWEAKATNKDVSKEISCKTGGGNSEDSALETTSRETRKGIDNHPEIFGKLKESFLKAFKVMDWELRMQQSIDCFSSGTTAVALLKQGRDLVIGNIGDSRAVLCTRDRDNSLVAVQLTVDLKPDIPAEAERILKCKGRVFALEGEPEVARVWLPNNDSPGLSMARAFGDFCLKDFGVISVPEISYRLLTEKDEFIVLATDGIWNVLSNKEVVDIVASAPIRSAARSLVESAVKAWRFKSPSSSIDDCAVVCIFLDSMISQAQLV 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15645117 15648865 + evm.model.ptg000008l.1254 HCH8g0281 549379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0281 384 Pfam Protein phosphatase 2C 170 337 IPR001932 -
HCH8g0281 384 CDD PP2Cc 62 374 IPR001932 -
HCH8g0281 384 ProSiteProfiles PPM-type phosphatase domain profile. 62 374 IPR001932 -
HCH8g0281 384 SMART PP2C_4 54 372 IPR001932 -
HCH8g0281 384 MobiDBLite consensus disorder prediction 135 150 - -
HCH8g0281 384 PANTHER PROTEIN PHOSPHATASE 48 373 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH8g0281 384 MobiDBLite consensus disorder prediction 135 156 - -
HCH8g0281 384 SUPERFAMILY PP2C-like 59 375 IPR036457 -
HCH8g0281 384 Gene3D - 57 376 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0615 HCH-Chr10:5015305 HCH8g0281 HCH-Chr8:15645117 1.80E-146 dispersed
HCH2g0802 HCH-Chr2:51605235 HCH8g0281 HCH-Chr8:15645117 5.10E-98 dispersed
HCH5g0049 HCH-Chr5:278917 HCH8g0281 HCH-Chr8:15645117 9.10E-13 dispersed
HCH6g0929 HCH-Chr6:44069550 HCH8g0281 HCH-Chr8:15645117 2.90E-116 dispersed
HCH8g0281 HCH-Chr8:15645117 HCH9g0809 HCH-Chr9:5595394 2.30E-88 dispersed
HCH8g0281 HCH-Chr8:15645117 HCH7g0165 HCH-Chr7:1106621 5.90E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0281 - - - 0.0