Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0316 | ATGCCTCCCGATATATCCTTATGTTCACGAGTTGTTCCACGAGTTGAAGATGAGACCGGTGATGAATTTCCATCTTCTAGAGGAAAAAATTCTCTTAGTTCTAGTACAGAAACTGAACGTGAGGATGTGGATAGTGTTACTAGTTCAAAGGATGGGTCAATAAGTGAGGCAGCAATAGCTGAAATCGAAGCAGGCATCTACGGCTTGCAGATCATCAAGGATGCAGATCTTGAAGAACTGCAGGAGTTAGGATCTGGGACATTTGGCACAGTTTATCATGGAAAATGGAGGGGAACAGATGTTGCTATTAAGAGAATAAAAAAAAGTTGCTTCTCAGGCAGCTTTTCAGAGCAAGAACGATTGACTAGAGATTTCTGGAGAGAAGCACGGATTCTATCGACCTTTCACCATCCGAATGTATTGGCTTTTTATGGGGTGGTTCCTGATGGACCTGATAGAACACTGGCAACCGTAACTGAGTTTATGGTAAATGGTTCTTTGAGGCATGTCTTTTTAAGGAAGGACAGAGTGCTTGATCGTCGGAAAAGGCTTCTGATTGCAATGGACGCAGCTTTCGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTATTAGTCAACTTGAGGGATCCTGAACGACCTGTATGTAAGGTTGGGGATTTTGGGTTGTCGAGAATTAAACGCAACACCCTCGTTTCTGGAGGTGTGCATGGAACCCTTCCATGGATGGCACCAGAATTATTAGACAGTAGCAGTAGTAAGGTCTCTGAAAAGGTTGATATTTTCTCATTCGGTATTGCAATGTGGGAGATTCTGACAGGGGAGGAGCCATACGATAATATGCATTGTGGTGCTATCATTGGTAATTTTCCTTCCTACTGA | 906 | 41.83 | MPPDISLCSRVVPRVEDETGDEFPSSRGKNSLSSSTETEREDVDSVTSSKDGSISEAAIAEIEAGIYGLQIIKDADLEELQELGSGTFGTVYHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTFHHPNVLAFYGVVPDGPDRTLATVTEFMVNGSLRHVFLRKDRVLDRRKRLLIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPVCKVGDFGLSRIKRNTLVSGGVHGTLPWMAPELLDSSSSKVSEKVDIFSFGIAMWEILTGEEPYDNMHCGAIIGNFPSY | 301 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 24802619 | 24804229 | - | evm.model.ptg000008l.1219 | HCH8g0316 | 549414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0316 | 301 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 48 | 297 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
| HCH8g0316 | 301 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 202 | 214 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH8g0316 | 301 | Gene3D | Phosphorylase Kinase; domain 1 | 70 | 163 | - | - | |
| HCH8g0316 | 301 | Gene3D | Transferase(Phosphotransferase) domain 1 | 164 | 298 | - | - | |
| HCH8g0316 | 301 | ProSiteProfiles | Protein kinase domain profile. | 77 | 301 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH8g0316 | 301 | Pfam | Protein tyrosine and serine/threonine kinase | 79 | 291 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH8g0316 | 301 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 70 | 164 | - | - | |
| HCH8g0316 | 301 | SMART | serkin_6 | 77 | 301 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH8g0316 | 301 | ProSitePatterns | Protein kinases ATP-binding region signature. | 83 | 108 | IPR017441 | GO:0005524(InterPro) | |
| HCH8g0316 | 301 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| HCH8g0316 | 301 | CDD | STKc_MAP3K-like | 83 | 295 | - | - | |
| HCH8g0316 | 301 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 291 | IPR011009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH7g1404 | HCH-Chr7:46788026 | HCH8g0316 | HCH-Chr8:24802619 | 2.30E-165 | dispersed | |
| HCH8g0316 | HCH-Chr8:24802619 | HCH8g0902 | HCH-Chr8:45359442 | 1.90E-101 | dispersed | |
| HCH8g0316 | HCH-Chr8:24802619 | HCH3g0500 | HCH-Chr3:3237128 | 1.50E-111 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81684 | PF07714 | PK_Tyr_Ser-Thr | 3.10E-49 | CL0016 | HCH | PK |
Pathway information