Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0320 ATGGGTGTTTCAGGAAAATGGTTCAAAGCATTTGTTGGATCAAAGAAATCAGAAAAATCTCAGTCATCAGAAAATGATGAAAATGTGAGGACAGTTGCTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATGGATGCTGTTAAACTTCAGCATGATTTTGGTTCTAATTTTACCCCATTTATTGGAGAGTCTTATTCTCTTTCAAATACGGAAGCGGCTGGTGTGCCTTCTGATTCACTTCAAGCATGTGATCCATTGCATGGTCCACAAAATGATATAGAAGAACTGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTTAAAGGATTGGTAAGACTTCAAGCTCTTGTGAGGGGTCATGCCGTCAGAAAACAGGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTCCGTGCAAGGCGTGTGCGTATTGCATTGGAAAGTGAAACAACTCAACATAAACTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATAGAAGAAGGTTGGTGTGATAGTGTGGGATCTGTTGAAGAAATTCAAGCAAAATTATTAAAGAGGCAAGAGGCTGCAGCTAAGCGCGAGAGAGCCATGGCTTATGCTCTGGCACATCAGTGGCAAGCAGGATCAAGGCCGCAGGGTGCCCTCTCTGAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCATGGGAAAACCGCTTTCTTGACATTAATCTCAGAGATGGAGTGATGATTCATGAGAATGAATCCGCTGAGGGTAAAAATAGTTCCAAATCTCATTTAAAAACTGTTGGCAAGAAAACAAATTTAGCTACTGATCAATCAAACCTCTCGAGCCAAAAAACTGCCCCCTCTCATTCTGATGGATGTGGTTCATCACCTAGTAAGTCAGTAGGCACTGTAGAGGTATCAAGTGCACAATCTCAAAAGCCGAAGTCTATGCTTGCAACTGAAAGGCCAGTTGAAGAAGTCAAATCTAGAGCAGAGATTGGTTTAAGATCCCACAGTAATCCAAAAGAGAGATCCACACCAGTGGCCCAACATACAAAGAGGCGGTTATCTATGCCTAATACTGTTGGAGATCCAAGCAGTCAAAATAAGATAGTCAGGAATTCTAGCAAAACTGCCGGCAAAGTGACCTCTATGAAGTCCACTAGTGATAAGCCTAAGATGATTTCAAGAGGTGATTCAAAAACCACAAAATCTGTACCACAGAGTTGA 1311 42.64 MGVSGKWFKAFVGSKKSEKSQSSENDENVRTVANKFWHRRKHSVDMDAVKLQHDFGSNFTPFIGESYSLSNTEAAGVPSDSLQACDPLHGPQNDIEELAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETTQHKLQQQLENQARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRPQGALSEFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIHENESAEGKNSSKSHLKTVGKKTNLATDQSNLSSQKTAPSHSDGCGSSPSKSVGTVEVSSAQSQKPKSMLATERPVEEVKSRAEIGLRSHSNPKERSTPVAQHTKRRLSMPNTVGDPSSQNKIVRNSSKTAGKVTSMKSTSDKPKMISRGDSKTTKSVPQS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25360599 25395880 - evm.model.ptg000008l.1215 HCH8g0320 549418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0320 436 MobiDBLite consensus disorder prediction 279 436 - -
HCH8g0320 436 ProSiteProfiles IQ motif profile. 120 147 - -
HCH8g0320 436 MobiDBLite consensus disorder prediction 292 344 - -
HCH8g0320 436 ProSiteProfiles IQ motif profile. 96 124 - -
HCH8g0320 436 PANTHER IQ-DOMAIN 5-RELATED 5 385 - -
HCH8g0320 436 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
HCH8g0320 436 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
HCH8g0320 436 MobiDBLite consensus disorder prediction 346 366 - -
HCH8g0320 436 Gene3D - 96 143 - -
HCH8g0320 436 MobiDBLite consensus disorder prediction 367 418 - -
HCH8g0320 436 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0320 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0419 HCH-Chr13:2901832 HCH8g0320 HCH-Chr8:25360599 6.70E-32 dispersed
HCH14g0967 HCH-Chr14:37105242 HCH8g0320 HCH-Chr8:25360599 5.80E-34 dispersed
HCH1g0657 HCH-Chr1:55483785 HCH8g0320 HCH-Chr8:25360599 1.40E-29 dispersed
HCH4g0529 HCH-Chr4:3451552 HCH8g0320 HCH-Chr8:25360599 1.30E-31 dispersed
HCH4g1489 HCH-Chr4:11277810 HCH8g0320 HCH-Chr8:25360599 1.20E-24 dispersed
HCH5g0880 HCH-Chr5:7274048 HCH8g0320 HCH-Chr8:25360599 2.70E-13 dispersed
HCH8g0320 HCH-Chr8:25360599 HCH9g0605 HCH-Chr9:4048401 1.50E-27 dispersed
HCH8g0320 HCH-Chr8:25360599 HCH12g0495 HCH-Chr12:2906074 1.20E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42