Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0320 | ATGGGTGTTTCAGGAAAATGGTTCAAAGCATTTGTTGGATCAAAGAAATCAGAAAAATCTCAGTCATCAGAAAATGATGAAAATGTGAGGACAGTTGCTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATGGATGCTGTTAAACTTCAGCATGATTTTGGTTCTAATTTTACCCCATTTATTGGAGAGTCTTATTCTCTTTCAAATACGGAAGCGGCTGGTGTGCCTTCTGATTCACTTCAAGCATGTGATCCATTGCATGGTCCACAAAATGATATAGAAGAACTGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTTAAAGGATTGGTAAGACTTCAAGCTCTTGTGAGGGGTCATGCCGTCAGAAAACAGGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTCCGTGCAAGGCGTGTGCGTATTGCATTGGAAAGTGAAACAACTCAACATAAACTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATAGAAGAAGGTTGGTGTGATAGTGTGGGATCTGTTGAAGAAATTCAAGCAAAATTATTAAAGAGGCAAGAGGCTGCAGCTAAGCGCGAGAGAGCCATGGCTTATGCTCTGGCACATCAGTGGCAAGCAGGATCAAGGCCGCAGGGTGCCCTCTCTGAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCATGGGAAAACCGCTTTCTTGACATTAATCTCAGAGATGGAGTGATGATTCATGAGAATGAATCCGCTGAGGGTAAAAATAGTTCCAAATCTCATTTAAAAACTGTTGGCAAGAAAACAAATTTAGCTACTGATCAATCAAACCTCTCGAGCCAAAAAACTGCCCCCTCTCATTCTGATGGATGTGGTTCATCACCTAGTAAGTCAGTAGGCACTGTAGAGGTATCAAGTGCACAATCTCAAAAGCCGAAGTCTATGCTTGCAACTGAAAGGCCAGTTGAAGAAGTCAAATCTAGAGCAGAGATTGGTTTAAGATCCCACAGTAATCCAAAAGAGAGATCCACACCAGTGGCCCAACATACAAAGAGGCGGTTATCTATGCCTAATACTGTTGGAGATCCAAGCAGTCAAAATAAGATAGTCAGGAATTCTAGCAAAACTGCCGGCAAAGTGACCTCTATGAAGTCCACTAGTGATAAGCCTAAGATGATTTCAAGAGGTGATTCAAAAACCACAAAATCTGTACCACAGAGTTGA | 1311 | 42.64 | MGVSGKWFKAFVGSKKSEKSQSSENDENVRTVANKFWHRRKHSVDMDAVKLQHDFGSNFTPFIGESYSLSNTEAAGVPSDSLQACDPLHGPQNDIEELAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETTQHKLQQQLENQARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRPQGALSEFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIHENESAEGKNSSKSHLKTVGKKTNLATDQSNLSSQKTAPSHSDGCGSSPSKSVGTVEVSSAQSQKPKSMLATERPVEEVKSRAEIGLRSHSNPKERSTPVAQHTKRRLSMPNTVGDPSSQNKIVRNSSKTAGKVTSMKSTSDKPKMISRGDSKTTKSVPQS | 436 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 25360599 | 25395880 | - | evm.model.ptg000008l.1215 | HCH8g0320 | 549418 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0320 | 436 | MobiDBLite | consensus disorder prediction | 279 | 436 | - | - | |
| HCH8g0320 | 436 | ProSiteProfiles | IQ motif profile. | 120 | 147 | - | - | |
| HCH8g0320 | 436 | MobiDBLite | consensus disorder prediction | 292 | 344 | - | - | |
| HCH8g0320 | 436 | ProSiteProfiles | IQ motif profile. | 96 | 124 | - | - | |
| HCH8g0320 | 436 | PANTHER | IQ-DOMAIN 5-RELATED | 5 | 385 | - | - | |
| HCH8g0320 | 436 | SMART | iq_5 | 118 | 139 | IPR000048 | GO:0005515(InterPro) | |
| HCH8g0320 | 436 | SMART | iq_5 | 95 | 117 | IPR000048 | GO:0005515(InterPro) | |
| HCH8g0320 | 436 | MobiDBLite | consensus disorder prediction | 346 | 366 | - | - | |
| HCH8g0320 | 436 | Gene3D | - | 96 | 143 | - | - | |
| HCH8g0320 | 436 | MobiDBLite | consensus disorder prediction | 367 | 418 | - | - | |
| HCH8g0320 | 436 | Pfam | IQ calmodulin-binding motif | 99 | 117 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0419 | HCH-Chr13:2901832 | HCH8g0320 | HCH-Chr8:25360599 | 6.70E-32 | dispersed | |
| HCH14g0967 | HCH-Chr14:37105242 | HCH8g0320 | HCH-Chr8:25360599 | 5.80E-34 | dispersed | |
| HCH1g0657 | HCH-Chr1:55483785 | HCH8g0320 | HCH-Chr8:25360599 | 1.40E-29 | dispersed | |
| HCH4g0529 | HCH-Chr4:3451552 | HCH8g0320 | HCH-Chr8:25360599 | 1.30E-31 | dispersed | |
| HCH4g1489 | HCH-Chr4:11277810 | HCH8g0320 | HCH-Chr8:25360599 | 1.20E-24 | dispersed | |
| HCH5g0880 | HCH-Chr5:7274048 | HCH8g0320 | HCH-Chr8:25360599 | 2.70E-13 | dispersed | |
| HCH8g0320 | HCH-Chr8:25360599 | HCH9g0605 | HCH-Chr9:4048401 | 1.50E-27 | dispersed | |
| HCH8g0320 | HCH-Chr8:25360599 | HCH12g0495 | HCH-Chr12:2906074 | 1.20E-43 | transposed |
Pathway information