Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0365 | ATGGATAATATCATCAGGGATGAGTACAAGAATTACTGGGAAACCAATATCTTCCTACAAGCCCAGGAACTCGACAGTTGGGGATTGGACGAGGCGTTATCCAGTTACTATGATTCGAGTTCGCCGGAGGGAGTTTTGTCGTCATCGGCGGCTTCAAAGAATATAGTAGCAGAGAGGAATAGGAGGAAAAAGCTGAATGATAGGCTGTTTGCACTTAGATCTGTTGTCCCCAATATAACCAAGATGGACAAGGCTTCTATAATAAAAGATGCAATTGGTTACATAGAAGATTTGCATGAGCAAGAGAAGAGAATTGAAGCTGAAATTATGCAGTTGGAATCAGGAAAGTTGAAGGAGATAAGTGGATATGATTTTGATCAAGATTTTCCATTGTTGATCAGATCAAAGAAGAAGAAAACAGAAGAGATTAGCTATGAATCCACTGGGTTGAGAACTTTCCCAATTGAAGTTATAGATTTAAGTGTGACATATATGGGGGAGAAAACAATAGTGGTGAGTTTGACATGCAGTAAAAGAGCAGATACAATGGTTAAACTCTGTGAAGTTTTTGAATCACTCAAACTCAAAATCATTACTGTTAATATCACTGCTGTCTCTGGAAACCTTTTGAAGACTGTCTTCATTGAGGCTGATCAACAAGAGAGAGATCTATTAAAGATTAAAATAGAATCAGCTATTGCAGTTCTCAATGATCCACAGAGACCTATGAGCATCTAA | 738 | 38.08 | MDNIIRDEYKNYWETNIFLQAQELDSWGLDEALSSYYDSSSPEGVLSSSAASKNIVAERNRRKKLNDRLFALRSVVPNITKMDKASIIKDAIGYIEDLHEQEKRIEAEIMQLESGKLKEISGYDFDQDFPLLIRSKKKKTEEISYESTGLRTFPIEVIDLSVTYMGEKTIVVSLTCSKRADTMVKLCEVFESLKLKIITVNITAVSGNLLKTVFIEADQQERDLLKIKIESAIAVLNDPQRPMSI | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 32998465 | 33000602 | - | evm.model.ptg000008l.1170 | HCH8g0365 | 549463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0365 | 245 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 50 | 113 | IPR036638 | GO:0046983(InterPro) | |
| HCH8g0365 | 245 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 46 | 115 | - | - | |
| HCH8g0365 | 245 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 48 | 226 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| HCH8g0365 | 245 | SMART | finulus | 55 | 104 | IPR011598 | GO:0046983(InterPro) | |
| HCH8g0365 | 245 | Coils | Coil | 95 | 115 | - | - | |
| HCH8g0365 | 245 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 98 | IPR011598 | GO:0046983(InterPro) | |
| HCH8g0365 | 245 | Pfam | Helix-loop-helix DNA-binding domain | 54 | 98 | IPR011598 | GO:0046983(InterPro) | |
| HCH8g0365 | 245 | Gene3D | - | 47 | 115 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0215 | HCH-Chr10:1782692 | HCH8g0365 | HCH-Chr8:32998465 | 1.10E-75 | dispersed | |
| HCH10g0216 | HCH-Chr10:1790197 | HCH8g0365 | HCH-Chr8:32998465 | 2.70E-57 | dispersed | |
| HCH7g0460 | HCH-Chr7:3401919 | HCH8g0365 | HCH-Chr8:32998465 | 1.90E-12 | dispersed | |
| HCH8g0365 | HCH-Chr8:32998465 | HCH9g0022 | HCH-Chr9:154219 | 3.50E-13 | dispersed | |
| HCH8g0365 | HCH-Chr8:32998465 | HCH8g1061 | HCH-Chr8:46542047 | 5.60E-112 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33990 | PF00010 | HLH | 3.80E-11 | No_clan | HCH | TF |
Pathway information