Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0365 ATGGATAATATCATCAGGGATGAGTACAAGAATTACTGGGAAACCAATATCTTCCTACAAGCCCAGGAACTCGACAGTTGGGGATTGGACGAGGCGTTATCCAGTTACTATGATTCGAGTTCGCCGGAGGGAGTTTTGTCGTCATCGGCGGCTTCAAAGAATATAGTAGCAGAGAGGAATAGGAGGAAAAAGCTGAATGATAGGCTGTTTGCACTTAGATCTGTTGTCCCCAATATAACCAAGATGGACAAGGCTTCTATAATAAAAGATGCAATTGGTTACATAGAAGATTTGCATGAGCAAGAGAAGAGAATTGAAGCTGAAATTATGCAGTTGGAATCAGGAAAGTTGAAGGAGATAAGTGGATATGATTTTGATCAAGATTTTCCATTGTTGATCAGATCAAAGAAGAAGAAAACAGAAGAGATTAGCTATGAATCCACTGGGTTGAGAACTTTCCCAATTGAAGTTATAGATTTAAGTGTGACATATATGGGGGAGAAAACAATAGTGGTGAGTTTGACATGCAGTAAAAGAGCAGATACAATGGTTAAACTCTGTGAAGTTTTTGAATCACTCAAACTCAAAATCATTACTGTTAATATCACTGCTGTCTCTGGAAACCTTTTGAAGACTGTCTTCATTGAGGCTGATCAACAAGAGAGAGATCTATTAAAGATTAAAATAGAATCAGCTATTGCAGTTCTCAATGATCCACAGAGACCTATGAGCATCTAA 738 38.08 MDNIIRDEYKNYWETNIFLQAQELDSWGLDEALSSYYDSSSPEGVLSSSAASKNIVAERNRRKKLNDRLFALRSVVPNITKMDKASIIKDAIGYIEDLHEQEKRIEAEIMQLESGKLKEISGYDFDQDFPLLIRSKKKKTEEISYESTGLRTFPIEVIDLSVTYMGEKTIVVSLTCSKRADTMVKLCEVFESLKLKIITVNITAVSGNLLKTVFIEADQQERDLLKIKIESAIAVLNDPQRPMSI 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 32998465 33000602 - evm.model.ptg000008l.1170 HCH8g0365 549463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0365 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 113 IPR036638 GO:0046983(InterPro)
HCH8g0365 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 115 - -
HCH8g0365 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 226 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH8g0365 245 SMART finulus 55 104 IPR011598 GO:0046983(InterPro)
HCH8g0365 245 Coils Coil 95 115 - -
HCH8g0365 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983(InterPro)
HCH8g0365 245 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
HCH8g0365 245 Gene3D - 47 115 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0215 HCH-Chr10:1782692 HCH8g0365 HCH-Chr8:32998465 1.10E-75 dispersed
HCH10g0216 HCH-Chr10:1790197 HCH8g0365 HCH-Chr8:32998465 2.70E-57 dispersed
HCH7g0460 HCH-Chr7:3401919 HCH8g0365 HCH-Chr8:32998465 1.90E-12 dispersed
HCH8g0365 HCH-Chr8:32998465 HCH9g0022 HCH-Chr9:154219 3.50E-13 dispersed
HCH8g0365 HCH-Chr8:32998465 HCH8g1061 HCH-Chr8:46542047 5.60E-112 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33990 PF00010 HLH 3.80E-11 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0365 - - - 0.0