Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0373 ATGGCAACTCAAGCACTTGTATCGTCATCTCTTACCTCTTCAGTTGGTGCAGCAAGACAGAGATTGGGAGGAAAACCCTCGTTTGGATCCTCAAGGAAACCAACCTCGTTTGTTGTAAGAGCGGAAGCTTCTCCTCCTGTTAAGCAAGGAGCTGATAGACAACTCTGGTTCGCTTCCAAACAAAGTCTCTCTTACTTGGATGGAAGCCTTCCAGGAGATTATGGATTTGACCCATTGGGACTCTCAGATCCAGAAGGAACCGGAGGGTTTATTGAACCAAGATGGTTAGCTTATGGTGAGGTTATCAATGGAAGGTTTGCCATGTTGGGGGCTGTTGGAGCCATTGCACCAGAGATATTTGGAAAACTTGGATTAATCCCTCCAGAAACAGCACTCCCTTGGTTCCAAACTGGTGTTATTCCACCAGCAGGAACATACAACTACTGGGCTGATCCATACACACTCTTTGTCTTTGAGCTGGCATTAATGGGCTTTGCTGAACACAGGAGATTTCAGGATTGGTACAATCCAGGGTCCATGGGCAAGCAATACTTCTTGGGCCTTGAGAAATTCTTAGGTGGATCAGATAACCCAGCATACCCAGGTGGCCCCTTGTTTAACCCTCTTGGCTTTGGAAAGGATGAGAAATCATTGAAGGAATTGAAACTCAAGGAAGTGAAGAATGGGAGATTGGCAATGTTGGCAATCTTGGGTTACTTTATACAAGCTCTTGTGACTGGAGTTGGACCTTTCCAAAACCTTTTGGATCATTTGTCTGATCCTGTCAACAACAATGTATTGACCAGCCTTAAATTCCATTAG 822 45.01 MATQALVSSSLTSSVGAARQRLGGKPSFGSSRKPTSFVVRAEASPPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEIFGKLGLIPPETALPWFQTGVIPPAGTYNYWADPYTLFVFELALMGFAEHRRFQDWYNPGSMGKQYFLGLEKFLGGSDNPAYPGGPLFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33885483 33886680 + evm.model.ptg000008l.1162 HCH8g0373 549471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0373 273 Pfam Chlorophyll A-B binding protein 64 243 IPR022796 -
HCH8g0373 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
HCH8g0373 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
HCH8g0373 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 21 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH8g0373 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0645 HCH-Chr4:4226454 HCH8g0373 HCH-Chr8:33885483 1.90E-44 dispersed
HCH7g0335 HCH-Chr7:2374643 HCH8g0373 HCH-Chr8:33885483 2.70E-35 dispersed
HCH8g0373 HCH-Chr8:33885483 HCH8g0587 HCH-Chr8:42695706 1.00E-37 dispersed
HCH8g0373 HCH-Chr8:33885483 HCH8g1293 HCH-Chr8:48037477 4.40E-41 transposed
HCH8g0373 HCH-Chr8:33885483 HCH3g0069 HCH-Chr3:401129 4.40E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0373 K08909 - csv:101202993 510.76