Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0373 | ATGGCAACTCAAGCACTTGTATCGTCATCTCTTACCTCTTCAGTTGGTGCAGCAAGACAGAGATTGGGAGGAAAACCCTCGTTTGGATCCTCAAGGAAACCAACCTCGTTTGTTGTAAGAGCGGAAGCTTCTCCTCCTGTTAAGCAAGGAGCTGATAGACAACTCTGGTTCGCTTCCAAACAAAGTCTCTCTTACTTGGATGGAAGCCTTCCAGGAGATTATGGATTTGACCCATTGGGACTCTCAGATCCAGAAGGAACCGGAGGGTTTATTGAACCAAGATGGTTAGCTTATGGTGAGGTTATCAATGGAAGGTTTGCCATGTTGGGGGCTGTTGGAGCCATTGCACCAGAGATATTTGGAAAACTTGGATTAATCCCTCCAGAAACAGCACTCCCTTGGTTCCAAACTGGTGTTATTCCACCAGCAGGAACATACAACTACTGGGCTGATCCATACACACTCTTTGTCTTTGAGCTGGCATTAATGGGCTTTGCTGAACACAGGAGATTTCAGGATTGGTACAATCCAGGGTCCATGGGCAAGCAATACTTCTTGGGCCTTGAGAAATTCTTAGGTGGATCAGATAACCCAGCATACCCAGGTGGCCCCTTGTTTAACCCTCTTGGCTTTGGAAAGGATGAGAAATCATTGAAGGAATTGAAACTCAAGGAAGTGAAGAATGGGAGATTGGCAATGTTGGCAATCTTGGGTTACTTTATACAAGCTCTTGTGACTGGAGTTGGACCTTTCCAAAACCTTTTGGATCATTTGTCTGATCCTGTCAACAACAATGTATTGACCAGCCTTAAATTCCATTAG | 822 | 45.01 | MATQALVSSSLTSSVGAARQRLGGKPSFGSSRKPTSFVVRAEASPPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEIFGKLGLIPPETALPWFQTGVIPPAGTYNYWADPYTLFVFELALMGFAEHRRFQDWYNPGSMGKQYFLGLEKFLGGSDNPAYPGGPLFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLSDPVNNNVLTSLKFH | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 33885483 | 33886680 | + | evm.model.ptg000008l.1162 | HCH8g0373 | 549471 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0373 | 273 | Pfam | Chlorophyll A-B binding protein | 64 | 243 | IPR022796 | - | |
HCH8g0373 | 273 | SUPERFAMILY | Chlorophyll a-b binding protein | 52 | 269 | - | - | |
HCH8g0373 | 273 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 54 | 272 | - | - | |
HCH8g0373 | 273 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 21 | 268 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro) | |
HCH8g0373 | 273 | Gene3D | Chlorophyll a/b binding protein domain | 54 | 272 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0645 | HCH-Chr4:4226454 | HCH8g0373 | HCH-Chr8:33885483 | 1.90E-44 | dispersed | |
HCH7g0335 | HCH-Chr7:2374643 | HCH8g0373 | HCH-Chr8:33885483 | 2.70E-35 | dispersed | |
HCH8g0373 | HCH-Chr8:33885483 | HCH8g0587 | HCH-Chr8:42695706 | 1.00E-37 | dispersed | |
HCH8g0373 | HCH-Chr8:33885483 | HCH8g1293 | HCH-Chr8:48037477 | 4.40E-41 | transposed | |
HCH8g0373 | HCH-Chr8:33885483 | HCH3g0069 | HCH-Chr3:401129 | 4.40E-41 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g0373 | K08909 | - | csv:101202993 | 510.76 |