Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0416 ATGTTTCAAGATGAAGGTACATCGTCTATAACTTCTTCTTCCCCTCTCCACTTCTTCACAATGATGTCACTTTCACCTAGTTTAGGATCACCCTACTCCTGGCTTCGAGAGTTGAAATCCGAGGAACGGGGTTTGTATTTGATCCAATTGTTGCTCAATTGTGCTAATCATGTGGCTGTTGGTGGCATTGAAAATGCAAATGTTTCTCTTGATCACATTTCCCATCTTGCTTCTGTGGATGGTGATACTATGCAGCGAATTGCTGCTTATTTCGCCGACGCTCTCGCCGATCGAATCCTCAAACCTTGGCGGGGTCTTTACAAGGCCTTTCATTCCACCAGGATACCAATGGTTTCAGAGGAGATTCTTGTTAAGAGATTGTTTTTTGAAGTGTTTCCATTCCTAAAGGTGGCTTTTGTACTTACGAACCAAGCTATCGTTGAAGCGATGGAGGGGGAAAAGATGGTTCACATAGTTGATCTTAATGCCAATGAGACTGCTCAGTGGCTTGCACTTCTGCAAGTTTTCAGTGCCAGGCCTGAAGGCCCTCCCCATTTGAGAATCACTGGGGTTAATCCACAGAAAGAGGTTTTGGATCAAATGGCTCGTAGGCTGACTGAAGAAGCAGAAAAGTTGGATATCCCATTTCAATTCAATTCCATAGTCAGCAGGTTGGATAATCTTGAAATGGAAAAACTTCGTGTGAAAACCGGGGAGGCTCTGGCTATCTGCTCAGTTCTTCAGCTACACACCCTTTTGGCCTCTGATACCGAAGCCGTGCAAAAACAATCTCCGTTGGCGCCAACGAGTGCGAGTGGAATTCAATATTCCAGATACCCGCATTTGAACCAAAGCACATTGAGTGAGTTGCTTGAAAAGGATTTGGTTAATGCTTGTAGTCCAAGTCCTGACTCGGTTTCTTCGTCGCCAGTGTCTCAAACTAATGCAGTGAAAATGGACAGCTTTCTGAATGGCTTGTGGGGTTTGACACCAAAGGTGATGGTAGTAACAGAACAAGATTCTAACCATAATGGTTCAAGTCTTATGGAGAGATTACTAGAAGCTCTCCACACATATGCAGCTATTTTTGATTGCTTGGAATCAAATTTGTCAAGAACATCACTGGAGAGGATAAAGTTGGAAAAGATGCTGTTTGGGGAAGAGATTAAGAACATTATAGCTTGTGAGGGAACTGAAAGAAAGGAACGACATGAAAAACTCGATAAATGGATTCAACGGTTCGATCTCGCTGGGTTCAGACATGTATCTTTGAGTTATTACGGGATGCTGCAGGCCAGGAGCCTGTTGCAGGGATATGGCTGTGATGGTTATAGGATTAAGGAAGAAAATGGTTGTGTGATGATTTGCTGGCAAGATCGACCACTGTTCTCAGTATCCGCTTGGAGGTGTTGTAAATAG 1419 43.69 MFQDEGTSSITSSSPLHFFTMMSLSPSLGSPYSWLRELKSEERGLYLIQLLLNCANHVAVGGIENANVSLDHISHLASVDGDTMQRIAAYFADALADRILKPWRGLYKAFHSTRIPMVSEEILVKRLFFEVFPFLKVAFVLTNQAIVEAMEGEKMVHIVDLNANETAQWLALLQVFSARPEGPPHLRITGVNPQKEVLDQMARRLTEEAEKLDIPFQFNSIVSRLDNLEMEKLRVKTGEALAICSVLQLHTLLASDTEAVQKQSPLAPTSASGIQYSRYPHLNQSTLSELLEKDLVNACSPSPDSVSSSPVSQTNAVKMDSFLNGLWGLTPKVMVVTEQDSNHNGSSLMERLLEALHTYAAIFDCLESNLSRTSLERIKLEKMLFGEEIKNIIACEGTERKERHEKLDKWIQRFDLAGFRHVSLSYYGMLQARSLLQGYGCDGYRIKEENGCVMICWQDRPLFSVSAWRCCK 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37985110 37986528 + evm.model.ptg000008l.1119 HCH8g0416 549514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0416 472 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 468 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009739(PANTHER)|GO:0043565(PANTHER)
HCH8g0416 472 Pfam GRAS domain family 47 469 IPR005202 -
HCH8g0416 472 ProSiteProfiles GRAS family profile. 38 469 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0652 HCH-Chr1:55453184 HCH8g0416 HCH-Chr8:37985110 3.60E-168 dispersed
HCH2g1073 HCH-Chr2:53712534 HCH8g0416 HCH-Chr8:37985110 2.40E-31 dispersed
HCH8g0416 HCH-Chr8:37985110 HCH8g1450 HCH-Chr8:48990978 3.30E-52 dispersed
HCH8g0416 HCH-Chr8:37985110 HCH10g1334 HCH-Chr10:45879793 1.70E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33993 PF03514 GRAS 2.90E-138 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0416 - - - 0.0