Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0446 ATGCAGTCGAAGTCTGACACCAACAATCAACTCGAATCCGATCCAAATGGTGTTCCATCGACGAATATTTATTATGAACCCTGGTGGCGAGGCATTGGGTACAATCCTATTCCACTACCTGTGGTAGGGGGGAATGCTTCCAACTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCGAATAATGACTTGAACGAGGAAGAAGATGATGTCACTAAAGAAGTGCAATCTAATGGATCTCCACATTCAGCTGGAAGCTACGGACAGGATGCTCAGAAGATGCAGCATGTTTCAGGCACTCTGCCAGCTATGCATGGTGAATGTCTGACACAGTCTACACAACTTGAACTTGTTGGTCACTCCATTGCATGTGCAGGAAATCCATATCAGGACCCATATTATGGAGGAATGATGGCTGTTTATGGGCATCAGCCCTTGGGTTATCCTATTGTTGGAGCACCACATGCTAGGATGCCGTTGCCCCTAGAGATAGCACAAGACCCTGTTTTTGTGAATGCTAAGCAATACCAAGGAATTTTGAGGCGGAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAGGAAGCTGATAAAAGCCAGAAAGCCGTACCTTCATGAATCTAGACACCAGCATGCCATAAGGAGGAGTAGGGGTACTGGAGGACGTTTTGCCAAGAAAGGTGAAGCTACTGGAGAAGAGATGCATGTTGATAAAGTAAAGGACAGTGGTTACCGCCTAAATGACCGTTCCGATCAGCAGAACGGAAGCTCCTCGATATATAATGCTTCTCAGTAG 816 46.57 MQSKSDTNNQLESDPNGVPSTNIYYEPWWRGIGYNPIPLPVVGGNASNSTSLEFPNGGSESNDGQSVSNNDLNEEEDDVTKEVQSNGSPHSAGSYGQDAQKMQHVSGTLPAMHGECLTQSTQLELVGHSIACAGNPYQDPYYGGMMAVYGHQPLGYPIVGAPHARMPLPLEIAQDPVFVNAKQYQGILRRRQARAKAEAERKLIKARKPYLHESRHQHAIRRSRGTGGRFAKKGEATGEEMHVDKVKDSGYRLNDRSDQQNGSSSIYNASQ 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39553871 39556797 - evm.model.ptg000008l.1089 HCH8g0446 549544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0446 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 MobiDBLite consensus disorder prediction 211 271 - -
HCH8g0446 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
HCH8g0446 271 MobiDBLite consensus disorder prediction 39 102 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 255 271 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 42 69 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 1 20 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 211 227 - -
HCH8g0446 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 MobiDBLite consensus disorder prediction 84 102 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 1 22 - -
HCH8g0446 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 260 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH8g0446 271 MobiDBLite consensus disorder prediction 233 254 - -
HCH8g0446 271 Gene3D - 173 235 - -
HCH8g0446 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0446 K08064 - - csv:101212860 454.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1124 HCH-Chr14:38158728 HCH8g0446 HCH-Chr8:39553871 1.60E-26 dispersed
HCH4g1200 HCH-Chr4:8039548 HCH8g0446 HCH-Chr8:39553871 2.60E-32 dispersed
HCH8g0446 HCH-Chr8:39553871 HCH9g1106 HCH-Chr9:13339242 8.30E-32 dispersed
HCH10g0556 HCH-Chr10:4471161 HCH8g0446 HCH-Chr8:39553871 3.50E-27 transposed
HCH2g1368 HCH-Chr2:55522863 HCH8g0446 HCH-Chr8:39553871 3.40E-83 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g1368 . 1 232 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.5 1.2e-57 220.3
HCH8g0446 . 1 236 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.5 1.9e-52 203.0
HCH8g0446 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 6.0e-47 184.9
HCH14g1124 . 37 243 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.1 2.8e-50 195.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33996 PF02045 CBFB_NFYA 7.40E-26 No_clan HCH TF