Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0450 ATGGCAGAAACTCCAAAGAAGACTATTCGATCTCCATCCAAGCTAAAGCAATCGCCTCGTCTCAATAACAAATCCACGCCCTCACTTACTCCCGCAACTCCACAAACATTAAATCCTCCTCGGAGATCGTCCCGTCGTAGATCTTTAGGTTTCGATTCTCTCACTCCTTTAAAAACTGATATTGAGATTGATTCTTTAAAATCTGTGGAAATATTCGACAAGGAGAAGATTCCTCGTAGATCGATTAGTTATGGAGATGATTCAGAGAAGAATGCCAAGAAAGGACGAGTCACTGAAATTGTTAAATCCCCTAAAAGTGAGAGTGAAAGAAAGAGTCTTTCTAAGAGGGGGAAGCGAAGAACTGGCACCGATGAGGATGGAGTTATATTTTCTCCTGCTTCTCCCGAACAATCGGAGAGGAAGAAGAGGAAGACGTGTAGTAAGAGATCAGTGGTCTCAATAGGAGCGGTTTCCAAAAATCCGGAGTCGGAGGGGATAAATAGAAGTGGTGGGAGATCGAGGAAACGGGTGTATTACCAGAAAGTGATTTTTGATGGGGGTGAATTTGAGGTTGGGGATGATATTTATGTGAAGAGGAGAGAAGATGCAAGTTCGGAAGATGAGGATCCTGAAGTGGAGGAGTGTAGAATGTGTTTCAAGTCTGGAAATACTGTAATGATTGAGTGTGATGATTGTCTTGGTGGCTTTCATTTGAAGTGTTTGAAGCCGCCGTTGAAGGAAGTTCCAGAGGGGGATTGGATATGTGGGTTTTGTGAGGCTGTAAAAATTGGAAAGAAGGTCGAGTTTCCGAAGCCCCCGGAGGGGAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGTCTAGTGACCTGTGGGCTGCTCATATTGAAAGTTTATGGAAAGAACTGGATGGTAGCTACTGGTGTAATGTTAGGTGGTATATAATCCCAGAAGAGACAGCATCTGGAAGGCAACCACATAACTTGAGGAGAGAGATCTACTTAACTAATGATTTCGCAGACATCGAGATGGCTTCCGTTCTTAGACTGTGTCAAGTCCTGAATCCTAAAGAATATTGTAATGCTAATGAAGGGGATGATATCTTTTTATGTGAGTATGAATATGATATTCATTGGCACAGTTTTAAGCGTTTAGCTGGAATTGATAAAGACAAGGATGGTGAAGCTGTTGATAGTGACAAAGACTGGAAGTTGGATCAGAATGTAGATTCTGATACAGACGGAGATGTAGAATATGAAGAAGAGAAAGTAAAAGTTTTACAGTCTAGAATCTGCTCAACCCATGAATTGGCTGCGAATTCAAGCAAAGGACGGTTTTTTGGACTTCAAAAGGTCGGAGCAAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGATCTGGAAAGAGCAAAGGCAACCCTTATGTTGTCATCATTACCCAAGTCTCTGCCTTGCAGGAATAAAGAAATGGAGGAGATAACTACATTTATAAAAAGTGCTATCTGTGATGATCAATGTCTGGGACGATGCCTGTACATCCATGGTGTTCCAGGAACGGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAGCCTGAGGGCTGAAGTTGATGCAGGAAATATAAGACCTTATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCATCACCAGAAAATATATACAGGGTCATATATGAAGCATTAACTGGGCATAGGGTTAGTTGGAAAAAGGCTCTTCACTTGTTAAGTGAACGATTTTCAGATGCAAAGAATTGCAAACAGGATGATCGACCTTGTATTCTGCTTATTGATGAACTCGATCTCCTTGTAACTAGAAATCAGTCCGTTCTATATAACATTCTTGATTGGCCTACAAGGCCACAAGCAAAATTGATTGTGATAGGAATAGCAAACACCATGGACCTTCCAGAGAAGTTACTTCCTCGAATTTCAAGCCGAATGGGTATTGAACGACTTTGCTTTGGCCCCTACAACTATCAACAACTTCAAGAAATCATTTCAAGCCGCCTTGAAGGAATCGATGCATTTGAAAAACAAGCCATTGAATTTGCTTCAAGAAAGGTAGCAGCTATATCAGGAGATGCACGTCGTGCTTTAGAGATATGTAGGCGTGCAGCTGAAATTACTGACTACCATTTAAAGAAGCTGAGCTTGACTCCTAACACTAATTTGAATGTGAAAACGCATGTGGGTATGGCTGATATTGAAGCAGCAATTCAGGAAATGTTTCAAGCACCTCATATTCAAGTAATGAAGAGTTGTTCAAAACTAAGTAAGATCTTCTTGTCAGCTATGGTGCACGAACTTTATACAACTGGAATGGGTGAAACCACCTTTGAAAAGATTGCCATGACCGTCGCACGTCTTTGTACAAGCAATGGAGAATCATTTCCAGGATATGATGCTCTATTGAAAGTTGGCTGTAAGCTAGGTGAATGCAGAATCGTTTTATGTGAATCAGGAGCCAAGCACCGGTTGCAAAAGTTGCAGCTCAATTTTCCAAGTGATGATGTGTCATTTGCATTGAAAGACGGCAAGGATCTACCTTGGTTGGCTAAGTACTTATGA 2595 41.58 MAETPKKTIRSPSKLKQSPRLNNKSTPSLTPATPQTLNPPRRSSRRRSLGFDSLTPLKTDIEIDSLKSVEIFDKEKIPRRSISYGDDSEKNAKKGRVTEIVKSPKSESERKSLSKRGKRRTGTDEDGVIFSPASPEQSERKKRKTCSKRSVVSIGAVSKNPESEGINRSGGRSRKRVYYQKVIFDGGEFEVGDDIYVKRREDASSEDEDPEVEECRMCFKSGNTVMIECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEAVKIGKKVEFPKPPEGKKRVRTMREKLLSSDLWAAHIESLWKELDGSYWCNVRWYIIPEETASGRQPHNLRREIYLTNDFADIEMASVLRLCQVLNPKEYCNANEGDDIFLCEYEYDIHWHSFKRLAGIDKDKDGEAVDSDKDWKLDQNVDSDTDGDVEYEEEKVKVLQSRICSTHELAANSSKGRFFGLQKVGAKKIPEHIRCHKQTDLERAKATLMLSSLPKSLPCRNKEMEEITTFIKSAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRAEVDAGNIRPYCFVEVNGLKLASPENIYRVIYEALTGHRVSWKKALHLLSERFSDAKNCKQDDRPCILLIDELDLLVTRNQSVLYNILDWPTRPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKLSLTPNTNLNVKTHVGMADIEAAIQEMFQAPHIQVMKSCSKLSKIFLSAMVHELYTTGMGETTFEKIAMTVARLCTSNGESFPGYDALLKVGCKLGECRIVLCESGAKHRLQKLQLNFPSDDVSFALKDGKDLPWLAKYL 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39714692 39733125 + evm.model.ptg000008l.1085 HCH8g0450 549548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0450 864 MobiDBLite consensus disorder prediction 1 53 - -
HCH8g0450 864 Gene3D - 662 729 - -
HCH8g0450 864 MobiDBLite consensus disorder prediction 72 125 - -
HCH8g0450 864 SMART BAH_4 246 386 IPR001025 GO:0003682(InterPro)
HCH8g0450 864 Pfam AAA lid domain 686 721 IPR041083 -
HCH8g0450 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 720 IPR027417 -
HCH8g0450 864 Pfam ATPase family associated with various cellular activities (AAA) 514 658 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH8g0450 864 SUPERFAMILY FYVE/PHD zinc finger 202 265 IPR011011 -
HCH8g0450 864 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 265 860 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
HCH8g0450 864 ProSiteProfiles Zinc finger PHD-type profile. 212 261 IPR019787 -
HCH8g0450 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 277 IPR013083 -
HCH8g0450 864 MobiDBLite consensus disorder prediction 11 43 - -
HCH8g0450 864 FunFam Origin recognition complex subunit 1 278 468 - -
HCH8g0450 864 Pfam BAH domain 294 384 IPR001025 GO:0003682(InterPro)
HCH8g0450 864 Pfam CDC6, C terminal winged helix domain 759 850 IPR015163 -
HCH8g0450 864 Gene3D - 156 401 IPR043151 -
HCH8g0450 864 Pfam PHD-finger 215 258 IPR019787 -
HCH8g0450 864 FunFam Origin recognition complex subunit 1 661 753 - -
HCH8g0450 864 FunFam Origin recognition complex subunit 1 210 277 - -
HCH8g0450 864 SMART AAA_5 509 662 IPR003593 GO:0016887(InterPro)
HCH8g0450 864 MobiDBLite consensus disorder prediction 72 147 - -
HCH8g0450 864 SMART PHD_3 214 259 IPR001965 -
HCH8g0450 864 Gene3D - 465 661 IPR027417 -
HCH8g0450 864 ProSitePatterns Zinc finger PHD-type signature. 215 258 IPR019786 -
HCH8g0450 864 FunFam Origin recognition complex subunit 1 466 664 - -
HCH8g0450 864 ProSiteProfiles BAH domain profile. 259 386 IPR001025 GO:0003682(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1033 HCH-Chr2:53478693 HCH8g0450 HCH-Chr8:39714692 6.10E-31 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33997 PF00004 AAA 1.80E-20 CL0023 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0450 K02603 - csv:101214082 1253.43