Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0463 ATGGAGAGCTGTATGATGGTTGATTATCCTTTGGGTGATAGTTCAGACATGGAAGTTGATGATATAAGATGTGATAACATTGCAGAGAAAGATGTTAGTGATGAGGAAATTGAAGCTGAGGATCTGGAGAGGCGTATGTGGAAGGACCGAATTAAACTTAAAAGGCTTAAGGAAAAGGAGAAGCTTGCTGCACAACAGGCTGCTGAAAAGCAAAAACCGAAGCAGACAACTGACCAGGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGTTGAAACTGATGGAAGTGTGCAAAGCTCGTGGATTTGTGTATGGTATCATCCCTGAAAAGGGTAAACCAGTTAGTGGTGCTTCTGATAACATTAGAGCTTGGTGGAAAGAAAAGGTTAAATTTGATAAGAATGGACCAGCTGCCATAGCCAAGTATGAAGCAGATTGTCTTGCCAGTGGAGAGGCAGATGGAAATGGAAACGGGAATTCTCAGAGCATTCTCCAAGACCTGCAGGATGCGACTCTGGGGTCTCTTTTGTCTTCTTTGATGCAACACTGCGATCCCCCTCAACGCAAGTACCCTTTAGAAAAGGGGGTTCCTCCACCCTGGTGGCCCTCTGGAAATGAAGATTGGTGGATAAAACTTGGGCTATCCCATGGCCAGAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAGGTTGGGGTTTTAACAGCCGTGATAAAACACATGTCACCTGATATTGCAAAGATAAGGAGGCATATACGCCAGTCTAAGTGTTTACAGGATAAGATGACAGCAAAGGAAAGTGCAATCTGGTTGGGAGTTTTAGGCCGAGAGGAATCTGTCATTCGACAACCTAGCAGTGATAATGGGACATCTGGAATAACAGAGACACGAAGAGGTCGCCGTGGTGAGAAGCAAGCTGCGGTAAGCACTGACAGCGACTATGATGTTGATCTGGCTGATGATGGTGTTGGCTCAGTTTCTTCTAAAGAGGACAGGAGAAATCAATTGATGGATGCGGAGCCATCCAGCAATCTGAACAGTAGTGCTCATCCTACTCAAGAGGAGCAGGGTGAAAAACATGGGAGAAAAAGACGTCGTGGCAGGTCAAAACTTGCTGATCAAGCACTGGTTCCATTTCAGAATGAACTATCCCAAATTGAACTGAGAAATACTCGTCTCGATATAAACCATTCCGATGTACCTTTAGTTGGATTTGAGATTCCAGGGAATCAGCAGCAAAAGGAGAATATCTCAGCTTTGAGGCCTCTGGACAAAGATCTGAATGTCCAATCAGAAGTACCAGCTCCCCTCTTCAACAATTTCTCCTCCATTCCTTCTGGCAATGTCAATATAATTTCCACCCAGAGCATGTATGTGGATGGAAGGCCTTTGCTGTACCCTGTAATGCAAAATACTGAGATGCAACATGAAAGTGCTTACAATATTTATAATCCATCAGTTGAGTATAGATCCAATCACGATGTGCAGAATTCTCAATATGTGGTTGATGAGCCTCATATGAGACTGGAGGATGGAGGCCATGTGCCAATACATCATAGAAACGATGAGAATATAGGACGGGAATTCAACTATGTTAAAGACACATTCAACGCCGAACAAGATAGACCTGTTGTCGATACACAGTTTGGATCACCAATCAACAGTTTGTCATTAGATTATGGAGCATTTAACAGTCCTTTCCATCTAGGAATTGATGGCGCAAGCTCATTCGATGACTTTTTGGTTGATGATGATTTAATCCAATACTTTGGAGCATAA 1806 43.36 MESCMMVDYPLGDSSDMEVDDIRCDNIAEKDVSDEEIEAEDLERRMWKDRIKLKRLKEKEKLAAQQAAEKQKPKQTTDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEADCLASGEADGNGNGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWIKLGLSHGQSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHIRQSKCLQDKMTAKESAIWLGVLGREESVIRQPSSDNGTSGITETRRGRRGEKQAAVSTDSDYDVDLADDGVGSVSSKEDRRNQLMDAEPSSNLNSSAHPTQEEQGEKHGRKRRRGRSKLADQALVPFQNELSQIELRNTRLDINHSDVPLVGFEIPGNQQQKENISALRPLDKDLNVQSEVPAPLFNNFSSIPSGNVNIISTQSMYVDGRPLLYPVMQNTEMQHESAYNIYNPSVEYRSNHDVQNSQYVVDEPHMRLEDGGHVPIHHRNDENIGREFNYVKDTFNAEQDRPVVDTQFGSPINSLSLDYGAFNSPFHLGIDGASSFDDFLVDDDLIQYFGA 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40151339 40153144 - evm.model.ptg000008l.1072 HCH8g0463 549561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0463 601 MobiDBLite consensus disorder prediction 290 381 - -
HCH8g0463 601 FunFam Ethylene insensitive 3-like 1 74 152 - -
HCH8g0463 601 FunFam Ethylene insensitive 3-like 1 161 297 - -
HCH8g0463 601 Pfam Ethylene insensitive 3, DNA-binding domain 40 287 IPR047091 GO:0003700(InterPro)
HCH8g0463 601 MobiDBLite consensus disorder prediction 62 85 - -
HCH8g0463 601 Coils Coil 25 59 - -
HCH8g0463 601 MobiDBLite consensus disorder prediction 303 319 - -
HCH8g0463 601 Gene3D - 160 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0463 601 Gene3D - 74 150 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0463 601 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 15 564 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0463 601 MobiDBLite consensus disorder prediction 347 361 - -
HCH8g0463 601 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0463 K14514 - - csv:101210347 937.562
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0463 HCH-Chr8:40151339 HCH8g0502 HCH-Chr8:41736719 3.00E-98 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0502 . 1 628 EIL Transcription Factor Family AT2G27050 59.5 2.1e-194 675.6
HCH13g0289 . 1 523 EIL Transcription Factor Family AT2G27050 61.7 2.6e-171 599.0
HCH8g0463 . 46 326 EIL Transcription Factor Family AT2G27050 63.3 1.6e-96 350.5
HCH8g0463 . 46 576 EIL Transcription Factor Family AT1G73730 55.2 6.2e-151 531.2
HCH8g0502 . 33 333 EIL Transcription Factor Family AT1G73730 62.1 5.2e-105 378.6
HCH13g0289 . 40 335 EIL Transcription Factor Family AT1G73730 62.0 1.3e-103 374.0
HCH13g1248 . 23 291 EIL Transcription Factor Family AT1G73730 50.7 2.3e-73 273.5
HCH8g0502 . 2 628 EIL Transcription Factor Family AT3G20770 60.6 1.0e-210 729.9
HCH13g0289 . 7 610 EIL Transcription Factor Family AT3G20770 53.2 1.0e-170 597.0
HCH8g0463 . 46 292 EIL Transcription Factor Family AT3G20770 69.5 6.9e-98 355.1
HCH8g0463 . 83 288 EIL Transcription Factor Family AT5G65100 59.8 7.1e-70 261.9
HCH13g1249 . 1 405 EIL Transcription Factor Family AT5G10120 51.4 2.2e-104 376.3
HCH13g1248 . 22 372 EIL Transcription Factor Family AT5G10120 54.2 4.7e-99 358.6
HCH8g0463 . 46 290 EIL Transcription Factor Family AT5G10120 55.7 1.1e-71 267.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34000 PF04873 EIN3 1.90E-127 No_clan HCH TF