Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0485 ATGAGAACTGTAAAACGCGAACCCTCCACCCGTAATAATCGTACTAAAAACATCGCCGTCGATGCTGCTTCTATCAAACAGATTAAACGGGAACGAGTCGCAAAGGAGCGAGTTCTTTCCGGCGACCAAAATATGAATCCGGAAGAACCGCAAGATTTGACGAATAGACGAGTTCTCCGGTCTCGTTATCTCGCGGTGATTCATAAAATTAGTGAGAAAGGAGAGGATTTTTCCAAGGACTCGGATAAATTCAATATTATTATCAATGAGGTAGAGAAGTTGCACGAGCAAGTTCAGAAGCCCAGGGAGCAAGTTGCAGATGCTGAAGCTTTGCAAGATATTGCAAATTCCCTTGTGACGTCTATTCGATCGCAGTCGAACGAAGGAGTTACTCCCTCGGATTTTGTTAGTTGTTTGCTTAGAGAGTTTGGTGACATTAACAGTGCAATAACTGCTGAACAGAATGATCTGATTACTATCAGTTGGAAAAATATCGGACTTGGTGCTTCACCCATTTTCATGAAGGGTCATGGTTGCTGCACCATGCTTGGACCCATGAGCACTCAGTTGAAGCAACGAAAGACAATCATTTCCAGAAAACGTTCCCGGCCTACTGAAACTGATCGACCGGCAGAGGTTGAAGATGATGGATCTGAAGGAAAAAGTGATACAGACAAGAATATGGGCATTATGTTCACAATTTTAAGGAGAAATAAATGTGTTAGACTTGAAAACTTAATATTAAATAGAAAGTCTTTTGCACAGACAGTGGAGAATTTATTTGCTTTGTCCTTCCTGGTTAAGGATGGCCGGGCTGAAATTACTGTGGATCAGAATGGTTCTCATCTTGTGTCACCGAAGAATGCCCCTGCCCACAGTTCCGTTATGTCACATGAAGTTAATTACAGTCATTTCGTATTCAGATTTGATTTCAAGGATTGGAAGCAAATGATGAATGCGGAATCAGTGGGGGAGGAGCTGATGCCCCACAGAGGCTTTCTGAACTCAGCGCCAAGTCCTCGAGCAGAACCAGCATATGATTCTGAACCAGCAGCATTACCTACTACTCCAATTCGGAAGCTGTCAAGGAATCGTGGTTTGGTTATGCAATCTGTTGTTGAAGATTCTCCTGATAATGGCACTTCAGGAGCAACTCCAATCTTGAGGTGTAAGCGGAAGCTTAGCCAAGGATAG 1194 43.22 MRTVKREPSTRNNRTKNIAVDAASIKQIKRERVAKERVLSGDQNMNPEEPQDLTNRRVLRSRYLAVIHKISEKGEDFSKDSDKFNIIINEVEKLHEQVQKPREQVADAEALQDIANSLVTSIRSQSNEGVTPSDFVSCLLREFGDINSAITAEQNDLITISWKNIGLGASPIFMKGHGCCTMLGPMSTQLKQRKTIISRKRSRPTETDRPAEVEDDGSEGKSDTDKNMGIMFTILRRNKCVRLENLILNRKSFAQTVENLFALSFLVKDGRAEITVDQNGSHLVSPKNAPAHSSVMSHEVNYSHFVFRFDFKDWKQMMNAESVGEELMPHRGFLNSAPSPRAEPAYDSEPAALPTTPIRKLSRNRGLVMQSVVEDSPDNGTSGATPILRCKRKLSQG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41106409 41108720 + evm.model.ptg000008l.1050 HCH8g0485 549583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0485 397 MobiDBLite consensus disorder prediction 191 224 - -
HCH8g0485 397 Pfam Nse4 C-terminal 241 328 IPR014854 -
HCH8g0485 397 MobiDBLite consensus disorder prediction 334 397 - -
HCH8g0485 397 PANTHER UNCHARACTERIZED 32 367 IPR027786 GO:0005634(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(PANTHER)|GO:0030915(InterPro)
HCH8g0485 397 MobiDBLite consensus disorder prediction 199 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0485 K22825 - - csv:101220149 584.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0270 HCH-Chr2:40007940 HCH8g0485 HCH-Chr8:41106409 8.40E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0485 . 44 395 Non-SMC Element family AT1G51130 53.4 1.3e-94 343.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35