Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0487 ATGGGAGAAGATGAAGAAGCTTCCTCATTCTGGAGTTCCAAAACCAACATTATTACCTCTGGTGAACCTTCATATTCACATGACAACTCTGGTTATTACATGCTGCATGCAGGTAAGCGAGCCAGAGTTAACGATCACAGCGATATCGCCGTCGTTGCAGCCGCCATGGCCGGGAAGTTTAAGGGTGTTGTGCCGCAACAAAACGGCCGGTGGGGGGCTCAAATTTACGCCAACCACCAGAGAATTTGGCTTGGAACTTTCAAATCGGAGAAAGAAGCCGCCATGGCTTACGACAGCGCTTCGATCAAGCTCCGAAGCCGAGATTCTCACCGGAACTTCCCGTGGACTCGTCACACCATTGAAGAACCTAATTTTCAAGACAAATTCACAACAGACGCCGCTTTGAACATGATCAAAGACGGGTCCTATTCTTCTAAATTCTTAGCTTTCTTAAGAACAACTCAAACTCAAACATACCAACCAGACGGTGGTGGCGATAAGCTCACAAAGGTCAACAATGGCGGTGGCGGGGACCGACATCTCTCCCGTAGCCATCTCTTTCAGAAGGAACTAACACCAAGTGATGTTGGAAAACTCAACAGACTTGTAATCCCTAAGAAATATGCAGTGAAGTATTTTCCATACATAAGCGAGAGCGAGGAAGAGAACGGCGGCGCTAATGGCGATAACGACGATATCGAGCTGGTCTTTTACGACCCGTCGATGAAGGCATGGAAATTCAGGTACTGTTACTGGAAAAGTAGTCAGAGTTTTGTGTTTACAAGAGGGTGGAATCGGTTTGTGAAGGAGAAGAAGTTGAAAGCTCATGATATTATAACGTTTTATGCTTATGAAAATGGATATGGGAATGAAGAAGAAGAAGAAGTGCAAACAATGTATTTAATAGATGTAATCTATAAAAGAGAAGCAGAAGAAGAAGAAGAAGAAAGACGAAGTAGTAGTAGCTTTCCATTACCGGCAGCGGTGGCGTCGACGGCGACGGCGGTGGTGGAGGAGAGGTGTAGGAAGGCGGATGATGAGATGCAGATGGTATTAGAACTCCGGTTGGGGAAGATTTTGAGCTTTGATAAAGTATTAGAGGAGGAGAAAGAGTGTGGTAAGAAGAAGAACAAGGTTGTTTTGAATCAAAATGTGGGTGAAAAGCGAATTAGGTTATTTGGAGTTCATATTAATTGA 1197 44.61 MGEDEEASSFWSSKTNIITSGEPSYSHDNSGYYMLHAGKRARVNDHSDIAVVAAAMAGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKEAAMAYDSASIKLRSRDSHRNFPWTRHTIEEPNFQDKFTTDAALNMIKDGSYSSKFLAFLRTTQTQTYQPDGGGDKLTKVNNGGGGDRHLSRSHLFQKELTPSDVGKLNRLVIPKKYAVKYFPYISESEEENGGANGDNDDIELVFYDPSMKAWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKAHDIITFYAYENGYGNEEEEEVQTMYLIDVIYKREAEEEEEERRSSSSFPLPAAVASTATAVVEERCRKADDEMQMVLELRLGKILSFDKVLEEEKECGKKKNKVVLNQNVGEKRIRLFGVHIN 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41117571 41118767 - evm.model.ptg000008l.1048 HCH8g0487 549585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0487 398 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
HCH8g0487 398 CDD B3_DNA 185 282 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 ProSiteProfiles B3 DNA-binding domain profile. 187 305 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 SUPERFAMILY DNA-binding pseudobarrel domain 184 287 IPR015300 -
HCH8g0487 398 FunFam AP2 domain-containing protein RAP2.8 58 115 - -
HCH8g0487 398 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 397 IPR044800 GO:0003700(InterPro)
HCH8g0487 398 SMART rav1_2 59 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0487 398 Gene3D AP2/ERF domain 59 115 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0487 398 Pfam B3 DNA binding domain 187 284 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 ProSiteProfiles AP2/ERF domain profile. 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0487 398 Gene3D - 181 317 IPR015300 -
HCH8g0487 398 CDD AP2 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1245 HCH-Chr10:44281681 HCH8g0487 HCH-Chr8:41117571 3.50E-43 dispersed
HCH7g1801 HCH-Chr7:49546770 HCH8g0487 HCH-Chr8:41117571 1.80E-23 dispersed
HCH8g0487 HCH-Chr8:41117571 HCH8g0924 HCH-Chr8:45540073 2.00E-90 dispersed
HCH8g0487 HCH-Chr8:41117571 HCH1g0802 HCH-Chr1:56706788 3.60E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34001 PF02362 B3 1.20E-25 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0487 K09287 - csv:101219913 380.948