Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0487 ATGGGAGAAGATGAAGAAGCTTCCTCATTCTGGAGTTCCAAAACCAACATTATTACCTCTGGTGAACCTTCATATTCACATGACAACTCTGGTTATTACATGCTGCATGCAGGTAAGCGAGCCAGAGTTAACGATCACAGCGATATCGCCGTCGTTGCAGCCGCCATGGCCGGGAAGTTTAAGGGTGTTGTGCCGCAACAAAACGGCCGGTGGGGGGCTCAAATTTACGCCAACCACCAGAGAATTTGGCTTGGAACTTTCAAATCGGAGAAAGAAGCCGCCATGGCTTACGACAGCGCTTCGATCAAGCTCCGAAGCCGAGATTCTCACCGGAACTTCCCGTGGACTCGTCACACCATTGAAGAACCTAATTTTCAAGACAAATTCACAACAGACGCCGCTTTGAACATGATCAAAGACGGGTCCTATTCTTCTAAATTCTTAGCTTTCTTAAGAACAACTCAAACTCAAACATACCAACCAGACGGTGGTGGCGATAAGCTCACAAAGGTCAACAATGGCGGTGGCGGGGACCGACATCTCTCCCGTAGCCATCTCTTTCAGAAGGAACTAACACCAAGTGATGTTGGAAAACTCAACAGACTTGTAATCCCTAAGAAATATGCAGTGAAGTATTTTCCATACATAAGCGAGAGCGAGGAAGAGAACGGCGGCGCTAATGGCGATAACGACGATATCGAGCTGGTCTTTTACGACCCGTCGATGAAGGCATGGAAATTCAGGTACTGTTACTGGAAAAGTAGTCAGAGTTTTGTGTTTACAAGAGGGTGGAATCGGTTTGTGAAGGAGAAGAAGTTGAAAGCTCATGATATTATAACGTTTTATGCTTATGAAAATGGATATGGGAATGAAGAAGAAGAAGAAGTGCAAACAATGTATTTAATAGATGTAATCTATAAAAGAGAAGCAGAAGAAGAAGAAGAAGAAAGACGAAGTAGTAGTAGCTTTCCATTACCGGCAGCGGTGGCGTCGACGGCGACGGCGGTGGTGGAGGAGAGGTGTAGGAAGGCGGATGATGAGATGCAGATGGTATTAGAACTCCGGTTGGGGAAGATTTTGAGCTTTGATAAAGTATTAGAGGAGGAGAAAGAGTGTGGTAAGAAGAAGAACAAGGTTGTTTTGAATCAAAATGTGGGTGAAAAGCGAATTAGGTTATTTGGAGTTCATATTAATTGA 1197 44.61 MGEDEEASSFWSSKTNIITSGEPSYSHDNSGYYMLHAGKRARVNDHSDIAVVAAAMAGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKEAAMAYDSASIKLRSRDSHRNFPWTRHTIEEPNFQDKFTTDAALNMIKDGSYSSKFLAFLRTTQTQTYQPDGGGDKLTKVNNGGGGDRHLSRSHLFQKELTPSDVGKLNRLVIPKKYAVKYFPYISESEEENGGANGDNDDIELVFYDPSMKAWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKAHDIITFYAYENGYGNEEEEEVQTMYLIDVIYKREAEEEEEERRSSSSFPLPAAVASTATAVVEERCRKADDEMQMVLELRLGKILSFDKVLEEEKECGKKKNKVVLNQNVGEKRIRLFGVHIN 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41117571 41118767 - evm.model.ptg000008l.1048 HCH8g0487 549585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0487 398 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
HCH8g0487 398 CDD B3_DNA 185 282 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 ProSiteProfiles B3 DNA-binding domain profile. 187 305 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 SUPERFAMILY DNA-binding pseudobarrel domain 184 287 IPR015300 -
HCH8g0487 398 FunFam AP2 domain-containing protein RAP2.8 58 115 - -
HCH8g0487 398 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 397 IPR044800 GO:0003700(InterPro)
HCH8g0487 398 SMART rav1_2 59 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0487 398 Gene3D AP2/ERF domain 59 115 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0487 398 Pfam B3 DNA binding domain 187 284 IPR003340 GO:0003677(InterPro)
HCH8g0487 398 ProSiteProfiles AP2/ERF domain profile. 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0487 398 Gene3D - 181 317 IPR015300 -
HCH8g0487 398 CDD AP2 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0487 K09287 - - csv:101219913 380.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1245 HCH-Chr10:44281681 HCH8g0487 HCH-Chr8:41117571 3.50E-43 dispersed
HCH7g1801 HCH-Chr7:49546770 HCH8g0487 HCH-Chr8:41117571 1.80E-23 dispersed
HCH8g0487 HCH-Chr8:41117571 HCH8g0924 HCH-Chr8:45540073 2.00E-90 dispersed
HCH8g0487 HCH-Chr8:41117571 HCH1g0802 HCH-Chr1:56706788 3.60E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0442 . 35 151 RAV Transcription Factor Family AT2G36080 72.7 2.0e-47 185.7
HCH5g0612 . 85 212 RAV Transcription Factor Family AT2G36080 62.3 5.3e-40 161.0
HCH1g0802 . 201 314 RAV Transcription Factor Family AT2G36080 62.9 5.5e-37 151.0
HCH5g0612 . 84 198 RAV Transcription Factor Family AT2G46870 86.2 1.4e-54 210.3
HCH11g0442 . 35 155 RAV Transcription Factor Family AT2G46870 66.4 1.5e-40 163.7
HCH1g0802 . 196 308 RAV Transcription Factor Family AT2G46870 68.1 5.5e-40 161.8
HCH10g1245 . 191 299 RAV Transcription Factor Family AT2G46870 67.0 3.0e-38 156.0
HCH11g0442 . 36 144 RAV Transcription Factor Family AT3G11580 72.7 1.5e-45 179.9
HCH5g0612 . 84 196 RAV Transcription Factor Family AT3G11580 63.7 3.2e-40 162.2
HCH1g0802 . 191 308 RAV Transcription Factor Family AT3G61970 65.0 2.0e-39 159.8
HCH10g1245 . 185 299 RAV Transcription Factor Family AT3G61970 63.2 8.5e-38 154.5
HCH5g0612 . 80 196 RAV Transcription Factor Family AT4G01500 65.6 6.4e-42 168.3
HCH11g0442 . 33 227 RAV Transcription Factor Family AT5G06250 52.8 6.6e-50 194.5
HCH5g0612 . 86 194 RAV Transcription Factor Family AT5G06250 66.4 3.7e-40 162.2
HCH1g0802 . 201 308 RAV Transcription Factor Family AT5G06250 62.4 8.4e-37 151.0
HCH10g1245 . 192 294 RAV Transcription Factor Family AT5G06250 67.9 1.4e-36 150.2
HCH8g0924 . 59 341 RAV Transcription Factor Family AT1G50680 52.1 6.0e-80 294.7
HCH8g0487 . 39 282 RAV Transcription Factor Family AT1G50680 61.7 2.3e-79 292.7
HCH8g0924 . 51 341 RAV Transcription Factor Family AT1G51120 52.5 1.1e-81 300.4
HCH8g0487 . 59 304 RAV Transcription Factor Family AT1G51120 60.2 2.6e-78 289.3
HCH1g0802 . 41 376 RAV Transcription Factor Family AT1G13260 62.2 1.3e-106 383.3
HCH10g1245 . 1 348 RAV Transcription Factor Family AT1G13260 60.2 2.2e-106 382.5
HCH11g0442 . 37 148 RAV Transcription Factor Family AT1G13260 66.7 7.5e-38 154.8
HCH5g0612 . 87 194 RAV Transcription Factor Family AT1G13260 69.7 2.2e-37 153.3
HCH10g1245 . 4 346 RAV Transcription Factor Family AT3G25730 58.6 5.9e-96 347.8
HCH1g0802 . 44 338 RAV Transcription Factor Family AT3G25730 62.8 2.9e-95 345.5
HCH5g0612 . 60 194 RAV Transcription Factor Family AT3G25730 55.8 1.1e-36 151.0
HCH11g0442 . 37 142 RAV Transcription Factor Family AT3G25730 65.5 1.4e-36 150.6
HCH1g0802 . 1 377 RAV Transcription Factor Family AT1G68840 59.7 1.5e-110 396.4
HCH10g1245 . 1 349 RAV Transcription Factor Family AT1G68840 59.5 7.8e-107 384.0
HCH5g0612 . 86 194 RAV Transcription Factor Family AT1G68840 69.4 3.5e-38 156.0
HCH11g0442 . 28 142 RAV Transcription Factor Family AT1G68840 63.4 5.0e-37 152.1
HCH10g1245 . 4 346 RAV Transcription Factor Family AT3G25730 58.6 5.9e-96 347.8
HCH1g0802 . 44 338 RAV Transcription Factor Family AT3G25730 62.8 2.9e-95 345.5
HCH5g0612 . 60 194 RAV Transcription Factor Family AT3G25730 55.8 1.1e-36 151.0
HCH11g0442 . 37 142 RAV Transcription Factor Family AT3G25730 65.5 1.4e-36 150.6
HCH8g0924 . 51 341 RAV Transcription Factor Family AT1G51120 52.5 1.1e-81 300.4
HCH8g0487 . 59 304 RAV Transcription Factor Family AT1G51120 60.2 2.6e-78 289.3
HCH11g0442 . 36 144 RAV Transcription Factor Family AT3G11580 72.7 1.5e-45 179.9
HCH5g0612 . 84 196 RAV Transcription Factor Family AT3G11580 63.7 3.2e-40 162.2
HCH5g0612 . 80 196 RAV Transcription Factor Family AT4G01500 65.6 6.4e-42 168.3
HCH11g0442 . 35 151 RAV Transcription Factor Family AT2G36080 72.7 2.0e-47 185.7
HCH5g0612 . 85 212 RAV Transcription Factor Family AT2G36080 62.3 5.3e-40 161.0
HCH1g0802 . 201 314 RAV Transcription Factor Family AT2G36080 62.9 5.5e-37 151.0
HCH11g0442 . 33 227 RAV Transcription Factor Family AT5G06250 52.8 6.6e-50 194.5
HCH5g0612 . 86 194 RAV Transcription Factor Family AT5G06250 66.4 3.7e-40 162.2
HCH1g0802 . 201 308 RAV Transcription Factor Family AT5G06250 62.4 8.4e-37 151.0
HCH10g1245 . 192 294 RAV Transcription Factor Family AT5G06250 67.9 1.4e-36 150.2
HCH5g0612 . 84 198 RAV Transcription Factor Family AT2G46870 86.2 1.4e-54 210.3
HCH11g0442 . 35 155 RAV Transcription Factor Family AT2G46870 66.4 1.5e-40 163.7
HCH1g0802 . 196 308 RAV Transcription Factor Family AT2G46870 68.1 5.5e-40 161.8
HCH10g1245 . 191 299 RAV Transcription Factor Family AT2G46870 67.0 3.0e-38 156.0
HCH8g0924 . 59 341 RAV Transcription Factor Family AT1G50680 52.1 6.0e-80 294.7
HCH8g0487 . 39 282 RAV Transcription Factor Family AT1G50680 61.7 2.3e-79 292.7
HCH1g0802 . 191 308 RAV Transcription Factor Family AT3G61970 65.0 2.0e-39 159.8
HCH10g1245 . 185 299 RAV Transcription Factor Family AT3G61970 63.2 8.5e-38 154.5
HCH1g0802 . 41 376 RAV Transcription Factor Family AT1G13260 62.2 1.3e-106 383.3
HCH10g1245 . 1 348 RAV Transcription Factor Family AT1G13260 60.2 2.2e-106 382.5
HCH11g0442 . 37 148 RAV Transcription Factor Family AT1G13260 66.7 7.5e-38 154.8
HCH5g0612 . 87 194 RAV Transcription Factor Family AT1G13260 69.7 2.2e-37 153.3
HCH1g0802 . 1 377 RAV Transcription Factor Family AT1G68840 59.7 1.5e-110 396.4
HCH10g1245 . 1 349 RAV Transcription Factor Family AT1G68840 59.5 7.8e-107 384.0
HCH5g0612 . 86 194 RAV Transcription Factor Family AT1G68840 69.4 3.5e-38 156.0
HCH11g0442 . 28 142 RAV Transcription Factor Family AT1G68840 63.4 5.0e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34001 PF02362 B3 1.20E-25 CL0405 HCH TF