Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0502 ATGATGATGTACAATGAGATTACGTTTTGTGACGATATGGACTTCTTTTCTGCTCCAATTGTGGAAGGAGATCCGGTAGCTCCATGCACTGATCCTGACGTCGTGGTGGAAGATGATTATTCGGATGAAGATATTGATGTCGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGGCACAAACGCCTTAAAGAGAAGACCAAGGTTAAGGAAGGGGTTGATATTGCAAAGCAGCGGCAGTCTCAAGAACAGGCTAGGAGGAAGAAGATGTCAAGGGCACAGGATGGAATCTTGAAGTACATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGTTTTGTATATGGAATTATTCCAGAAAAGGGAAAGCCTGTAACTGGGGCATCAGATAATCTTCGTGAGTGGTGGAAAGACAAAGTCAGATTTGATCGAAATGGACCAGCTGCTATATCCAAGTACCAATCAGATAACGCAATTCCCGGCAGAAATGATGGATGTAATTCGATCGGTCCAACCCCACACACCTTGCAGGAACTTCAGGATACAACCCTTGGTTCACTTTTATCAGCTCTGATGCAGCACTGTGATCCACCTCAAAGAAGGTTTCCATTGGAGAAAGGTGTTCCTCCACCATGGTGGCCTACTGGAGTTGAGGAATGGTGGCCACAGCTTGGCTTGCCCAAGGAACAAGGTCCTCCACCTTACAAGAAGCCTCATGACTTGAAGAAAGCATGGAAAGTTGGTGTTTTGACAGCAGTCATTAAGCACATGTCCCCTGATATAGCGAAGATTCGCAAGCTTGTCAGGCAGTCCAAGTGTTTGCAGGATAAGATGACTGCCAAGGAGAGTGCTACCTGGCTTGCTATTATCAACCAGGAGGAGGCCTTGGCCCGTGAGCTTTATCCCGACTCTTGCCCACCTCTGTCCTCGGCTGGGGGGAGTGGATCTCTGGTCATTAATGATTGCAGTGAGTACGATGTAGATGGAGCTGAAGAGGAGCCGAACTTTGATGTTCAAGATCGTAAACCTGATAATCTTAGCTCGTTCAACTTGGGGATGGAGAGAATGAGAGAAAGAATGCCACTTCGACAACCACCTTATGCAATCAAAGGAGAAGTTTCCACAAACTTGGATTTTATGAGAAAGAGGAAACCGACCAGTGATCTGAACATGATGATGGATCAGAAGATCTATACATGTGAGTTCCTTCAGTGTCCTTATAGTGAACTCCGCCTCGGGTTTAATGACAGGACTTCTAGGGACAATCATCAATTAACCTGCCCATATAGAGCTTCGTCAGAGTTCACTGGTTCAAATTTTCATGTTAATGAGGTCAAACCAGTCATCTTCCCTCAATCTTTTGTCCCATCCAAGCCAGCCGCATCTCCAGTTAGCTCCATCCCACCTCCCTTCGACTTGTCCGGTTTGGGAGTTCCAGAGGATGGTCAAAAGCTGATTAGTGAGCTCATGTCAATCTATGACACTAATGTTCAAGGCAACAAAAACGTAAATACCGGTAACAATGCTGTCACAGAGAATCAAAATCTTCCTCCGCTGAAGATTCAACATCAACAAGATGAGTATTTTCGTAATCAAGGCATGGTGATGGAAGGGAACTTCTTTGAAGGATCCAACGTTTCCAGCAGTCATCAGATGTTTACTAGAGACGAAGGTCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTTGAAAACAACCAGAACAACAACAACACCAGCAACAACAACACCAGCAACAACAACAATTTCCATTTTATGTTTGGCTCTCCATTCGATTTGTCGTCCTTCGAATACAAAGAAGAAGTATCAGGAGCAGCAATCGACACCCTGTCGAAACAACAGGATATTCCAATATGGTATCACCAATAA 1893 44.8 MMMYNEITFCDDMDFFSAPIVEGDPVAPCTDPDVVVEDDYSDEDIDVDELERRMWRDKMRHKRLKEKTKVKEGVDIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAISKYQSDNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKEQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDSCPPLSSAGGSGSLVINDCSEYDVDGAEEEPNFDVQDRKPDNLSSFNLGMERMRERMPLRQPPYAIKGEVSTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRASSEFTGSNFHVNEVKPVIFPQSFVPSKPAASPVSSIPPPFDLSGLGVPEDGQKLISELMSIYDTNVQGNKNVNTGNNAVTENQNLPPLKIQHQQDEYFRNQGMVMEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNQNNNNTSNNNTSNNNNFHFMFGSPFDLSSFEYKEEVSGAAIDTLSKQQDIPIWYHQ 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41736719 41738611 + evm.model.ptg000008l.1033 HCH8g0502 549600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0502 630 Gene3D - 172 305 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0502 630 MobiDBLite consensus disorder prediction 71 91 - -
HCH8g0502 630 FunFam Ethylene insensitive 3-like 1 168 305 - -
HCH8g0502 630 Pfam Ethylene insensitive 3, DNA-binding domain 48 295 IPR047091 GO:0003700(InterPro)
HCH8g0502 630 Coils Coil 47 67 - -
HCH8g0502 630 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 10 617 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0502 630 Gene3D - 80 157 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0502 630 MobiDBLite consensus disorder prediction 566 589 - -
HCH8g0502 630 MobiDBLite consensus disorder prediction 567 589 - -
HCH8g0502 630 FunFam Ethylene insensitive 3-like 1 80 158 - -
HCH8g0502 630 SUPERFAMILY DNA-binding domain of EIN3-like 174 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0289 HCH-Chr13:1915070 HCH8g0502 HCH-Chr8:41736719 2.10E-208 dispersed
HCH13g1248 HCH-Chr13:40237675 HCH8g0502 HCH-Chr8:41736719 6.20E-80 dispersed
HCH13g1249 HCH-Chr13:40247071 HCH8g0502 HCH-Chr8:41736719 8.50E-82 dispersed
HCH8g0463 HCH-Chr8:40151339 HCH8g0502 HCH-Chr8:41736719 3.00E-98 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34003 PF04873 EIN3 4.40E-129 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0502 K14514 - csv:101206055 1103.97