Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0502 ATGATGATGTACAATGAGATTACGTTTTGTGACGATATGGACTTCTTTTCTGCTCCAATTGTGGAAGGAGATCCGGTAGCTCCATGCACTGATCCTGACGTCGTGGTGGAAGATGATTATTCGGATGAAGATATTGATGTCGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGGCACAAACGCCTTAAAGAGAAGACCAAGGTTAAGGAAGGGGTTGATATTGCAAAGCAGCGGCAGTCTCAAGAACAGGCTAGGAGGAAGAAGATGTCAAGGGCACAGGATGGAATCTTGAAGTACATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGTTTTGTATATGGAATTATTCCAGAAAAGGGAAAGCCTGTAACTGGGGCATCAGATAATCTTCGTGAGTGGTGGAAAGACAAAGTCAGATTTGATCGAAATGGACCAGCTGCTATATCCAAGTACCAATCAGATAACGCAATTCCCGGCAGAAATGATGGATGTAATTCGATCGGTCCAACCCCACACACCTTGCAGGAACTTCAGGATACAACCCTTGGTTCACTTTTATCAGCTCTGATGCAGCACTGTGATCCACCTCAAAGAAGGTTTCCATTGGAGAAAGGTGTTCCTCCACCATGGTGGCCTACTGGAGTTGAGGAATGGTGGCCACAGCTTGGCTTGCCCAAGGAACAAGGTCCTCCACCTTACAAGAAGCCTCATGACTTGAAGAAAGCATGGAAAGTTGGTGTTTTGACAGCAGTCATTAAGCACATGTCCCCTGATATAGCGAAGATTCGCAAGCTTGTCAGGCAGTCCAAGTGTTTGCAGGATAAGATGACTGCCAAGGAGAGTGCTACCTGGCTTGCTATTATCAACCAGGAGGAGGCCTTGGCCCGTGAGCTTTATCCCGACTCTTGCCCACCTCTGTCCTCGGCTGGGGGGAGTGGATCTCTGGTCATTAATGATTGCAGTGAGTACGATGTAGATGGAGCTGAAGAGGAGCCGAACTTTGATGTTCAAGATCGTAAACCTGATAATCTTAGCTCGTTCAACTTGGGGATGGAGAGAATGAGAGAAAGAATGCCACTTCGACAACCACCTTATGCAATCAAAGGAGAAGTTTCCACAAACTTGGATTTTATGAGAAAGAGGAAACCGACCAGTGATCTGAACATGATGATGGATCAGAAGATCTATACATGTGAGTTCCTTCAGTGTCCTTATAGTGAACTCCGCCTCGGGTTTAATGACAGGACTTCTAGGGACAATCATCAATTAACCTGCCCATATAGAGCTTCGTCAGAGTTCACTGGTTCAAATTTTCATGTTAATGAGGTCAAACCAGTCATCTTCCCTCAATCTTTTGTCCCATCCAAGCCAGCCGCATCTCCAGTTAGCTCCATCCCACCTCCCTTCGACTTGTCCGGTTTGGGAGTTCCAGAGGATGGTCAAAAGCTGATTAGTGAGCTCATGTCAATCTATGACACTAATGTTCAAGGCAACAAAAACGTAAATACCGGTAACAATGCTGTCACAGAGAATCAAAATCTTCCTCCGCTGAAGATTCAACATCAACAAGATGAGTATTTTCGTAATCAAGGCATGGTGATGGAAGGGAACTTCTTTGAAGGATCCAACGTTTCCAGCAGTCATCAGATGTTTACTAGAGACGAAGGTCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTTGAAAACAACCAGAACAACAACAACACCAGCAACAACAACACCAGCAACAACAACAATTTCCATTTTATGTTTGGCTCTCCATTCGATTTGTCGTCCTTCGAATACAAAGAAGAAGTATCAGGAGCAGCAATCGACACCCTGTCGAAACAACAGGATATTCCAATATGGTATCACCAATAA 1893 44.8 MMMYNEITFCDDMDFFSAPIVEGDPVAPCTDPDVVVEDDYSDEDIDVDELERRMWRDKMRHKRLKEKTKVKEGVDIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAISKYQSDNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKEQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDSCPPLSSAGGSGSLVINDCSEYDVDGAEEEPNFDVQDRKPDNLSSFNLGMERMRERMPLRQPPYAIKGEVSTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRASSEFTGSNFHVNEVKPVIFPQSFVPSKPAASPVSSIPPPFDLSGLGVPEDGQKLISELMSIYDTNVQGNKNVNTGNNAVTENQNLPPLKIQHQQDEYFRNQGMVMEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNQNNNNTSNNNTSNNNNFHFMFGSPFDLSSFEYKEEVSGAAIDTLSKQQDIPIWYHQ 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41736719 41738611 + evm.model.ptg000008l.1033 HCH8g0502 549600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0502 630 Gene3D - 172 305 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0502 630 MobiDBLite consensus disorder prediction 71 91 - -
HCH8g0502 630 FunFam Ethylene insensitive 3-like 1 168 305 - -
HCH8g0502 630 Pfam Ethylene insensitive 3, DNA-binding domain 48 295 IPR047091 GO:0003700(InterPro)
HCH8g0502 630 Coils Coil 47 67 - -
HCH8g0502 630 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 10 617 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0502 630 Gene3D - 80 157 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH8g0502 630 MobiDBLite consensus disorder prediction 566 589 - -
HCH8g0502 630 MobiDBLite consensus disorder prediction 567 589 - -
HCH8g0502 630 FunFam Ethylene insensitive 3-like 1 80 158 - -
HCH8g0502 630 SUPERFAMILY DNA-binding domain of EIN3-like 174 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0502 K14514 - - csv:101206055 1103.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0289 HCH-Chr13:1915070 HCH8g0502 HCH-Chr8:41736719 2.10E-208 dispersed
HCH13g1248 HCH-Chr13:40237675 HCH8g0502 HCH-Chr8:41736719 6.20E-80 dispersed
HCH13g1249 HCH-Chr13:40247071 HCH8g0502 HCH-Chr8:41736719 8.50E-82 dispersed
HCH8g0463 HCH-Chr8:40151339 HCH8g0502 HCH-Chr8:41736719 3.00E-98 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0502 . 1 628 EIL Transcription Factor Family AT2G27050 59.5 2.1e-194 675.6
HCH13g0289 . 1 523 EIL Transcription Factor Family AT2G27050 61.7 2.6e-171 599.0
HCH8g0463 . 46 326 EIL Transcription Factor Family AT2G27050 63.3 1.6e-96 350.5
HCH8g0463 . 46 576 EIL Transcription Factor Family AT1G73730 55.2 6.2e-151 531.2
HCH8g0502 . 33 333 EIL Transcription Factor Family AT1G73730 62.1 5.2e-105 378.6
HCH13g0289 . 40 335 EIL Transcription Factor Family AT1G73730 62.0 1.3e-103 374.0
HCH13g1248 . 23 291 EIL Transcription Factor Family AT1G73730 50.7 2.3e-73 273.5
HCH8g0502 . 2 628 EIL Transcription Factor Family AT3G20770 60.6 1.0e-210 729.9
HCH13g0289 . 7 610 EIL Transcription Factor Family AT3G20770 53.2 1.0e-170 597.0
HCH8g0463 . 46 292 EIL Transcription Factor Family AT3G20770 69.5 6.9e-98 355.1
HCH8g0463 . 83 288 EIL Transcription Factor Family AT5G65100 59.8 7.1e-70 261.9
HCH13g1249 . 1 405 EIL Transcription Factor Family AT5G10120 51.4 2.2e-104 376.3
HCH13g1248 . 22 372 EIL Transcription Factor Family AT5G10120 54.2 4.7e-99 358.6
HCH8g0463 . 46 290 EIL Transcription Factor Family AT5G10120 55.7 1.1e-71 267.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34003 PF04873 EIN3 4.40E-129 No_clan HCH TF