Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0523 ATGGCCGATCCGGAAACTCAAAGAATTAGAAACATATGTATATTAGCACACGTCGATCACGGCAAAACAACGCTCGCCGACCACCTCATCGCTGCTTCAGGCGGCGGCTTAATCCACCCGAAGTTAGCCGGCCGCCTCCGGTTCATGGATTATCTCGACGAGGAACAAAGGCGTGCCATTACGATGAAGAGCTCTTCGATCAGTTTACGGTACGATGACTATTCTATTAACCTAATTGATTCTCCTGGTCATATGGATTTTTGCAGTGAAGTTTCTACTGCTGCTAGATTAAGTGATGGGGCATTGGTTTTAGTTGATGCTGTAGAGGGTGTGCATATTCAGACTCATGCCGTTTTACGCCAAGCTTGGATTGAGAAATTGACGCCGTGTTTAGTTCTTAATAAGATTGATAGATTGATATGTGAGTTGAAATTGAGTCCCATGGAGGCGTATACTCGTTTGTTGAGGATTATTCTTGAAGTTAATGGGATAATGAGTGCTTATAAGTCGGAAAAGTATTTGTCGGATGTTGATTCGCTACTTGCGGGTTCTTCGGGTGAGGTGAATGATGAGAGTCTAGAGTATATTGAGGATGATGAGGAAGATACGTTTCAACCACAGAAAGGGAATGTGGTGTTTGTGTGCGCATTGGATGGGTGGGGATTTGGAGTTAATGAATTTGCTGAGTTTTACGCTTCGAAGCTTGGGGCAAATGTAGCTGCATTGAGGAAGGCTTTGTGGGGTCCTCGGTATTTTAATCCGAAAACTAAGATGATTGTTGGAAAGAAGGGTATGGCTGGAGGGAGCAAAGCTAGGCCAATGTTTGTTCAATTTGTGCTCGAACGAGTTTGGGAAGTTTATAGGGCTGCTTTGGAAACTGACGGGGATAAGGAGGTGCTTAAAAAGGTGAATAGTACTTTTCATTTGAACATACCGGCACGAGAACTTTCCAACAAGGATCCGAAAGTGGCTCTTCAAGCTGTGATGAATCGTTGGCTTCCTCTGTCAGATGCAATCTTGTCAATGGTGGTGAAGTGTTTGCCTGACCCAGTTACTGCACAATCATTTAGAATTTCAAGGTTGCTTCCAAAGAGGGACATTGTCGATACTGGATCTGATGTCAATGTGCTTACTGAGGCAAACACTGTCAAGAAATCCATTGAAGCTTGCGATTCGAGGCCTGAAGCTCCATTGGTAGCTTTCGTATCCAAGATGTTTGCAGTGCCGGTAAAAATGCTCCCTCGGGGAGGCAATCATGTGGAGACTACAAACTACTCAGCTGAGGATGGTGGAGATGGTGAATCGGATGAGTGTTTTCTTGCATTTGCAAGAGTGTTTAGTGGGGTTATTCATTCTGGTCAGAGAGTTTTTGTGCTTTCAGCTTTATATGATCCGACGAAAGGGGAATCGATGCAAAAGCACATTCAGGAGGCACAGCTGAGTTCATTGTATTTAATGATGGGCCAAGGCTTAACACCAGTGAACTCAGTAAAAGCAGGAAACCTTGTAGCAATTCGTGGCCTTAGCCAGCACATACTTAAAAGTGCAACTCTTTCATCCACAAGGAATTCTTGGCCTTTCTCAAGTATGGCTTTCCAGGTTGCGCCAACTCTCAGGGTCGCACTTGAGCCATCTGATCCTGGAGATATAGGTGCATTATTGAAAGGCTTGAGGCTTTTGAATCGAGCAGATCCTTTTGTAGAGGTTACTGTTTCATCAAGGGGAGAACATGTACTTGCTGCAGCAGGAGAAGTTCATCTCGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCCAGAATAAGCTTGGAAGTTTCTCCACCTCTTGTATCCTATAAAGAGACAATTGAGGGAGAGCCATCCAATGTGTTGGATTATTTTAAAGTGTTATCTGAGAGCGCAGAGTGCGTAATCAAGAAAACCCCAAATGGTCGATGTGTTGTCAGAGTTCAGGTACTGAAACTTCCACCTGCTCTAACTAAAGTGCTTGATGAAAATTCGGATGTACTAGGAGATATTATTGGAGTCAAATCGGGGCAGAGCCATAAAAATTTGGATACAAAAAGAACGAGTTTGATGGAAATTGAGAATCCAGTAGAAACAGTAAAGAAACGCATATTGGATGCAGTATGTAGCAATATATCTTCCAATGATGAGTATGATGGAGGTCAGGTTGACAAACATAAGGTATCGTGGTCAAAGCTTCTAAGGCGGATTTGGGCTCTTGGACCACAGCAGATTGGTCCTAATATTCTGATTACCCCAGATATCAGAGTAGAAGATTCTGCTTGCTCTGTTCCTATTCGTGGTTCTTCTCATGTATCAGAGACGTTGGGTTTTGTGGATGATTCATTAAATGGTGATTTGGATGCTGAAACGTCTTTGGCGCATGATGTATCTTCTGTATCAGCAATAGAAGGAACTCAGACACTATACACGGAAGCAGAATCTCTTGAGAGCAGTGTTCTCTCTGGGTTTCAATTGGCTACAGCAGCTGGGCCGTTGTGTGATGAACCTATGTGGGGGTTGGCATTTATTGTTGAGGCTTGTATTTCCTCATTGTCCGGGAATTTTGATGAACCTGAAACCCCTCTTCAATCTGAGCATAGTGCGATCTTTTCAGGACAGGTTATGACTGTTGTGAAGGATGCCTGTAGGGCAGCTGTACTTCAAAAGAAACCACGACTTGTTGAAGCCATGTACTTCTGTGAATTGAATACATCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTTCTCGAAGGCGAGCCCGGATTATAAAAGAAGAAATGCAGGAAGGTTCATCTTTGTTTACTGTGCATGCATATTTGCCAGTTTCAGAAAGCTTTGGTTTCGCAGATGAGCTGCGGAGATGGACTTCTGGAGGTGCAAGTGCTCTTCTCGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTGTTCCCAAGACAGAAGAAGAAATTGAAGAATTTGGAGATGGTTCCAGTGTGCTTCCAAATACAGCAAGAAAGCTCATTGATACTGTAAGACGGCGCAAGGGTCTTCCAGTGGAAGACAAAGTCGTGCAGCATGCAACAAAGCAGAGAACCCTGTCTCGTAAAGTATAG 3114 43.67 MADPETQRIRNICILAHVDHGKTTLADHLIAASGGGLIHPKLAGRLRFMDYLDEEQRRAITMKSSSISLRYDDYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIILEVNGIMSAYKSEKYLSDVDSLLAGSSGEVNDESLEYIEDDEEDTFQPQKGNVVFVCALDGWGFGVNEFAEFYASKLGANVAALRKALWGPRYFNPKTKMIVGKKGMAGGSKARPMFVQFVLERVWEVYRAALETDGDKEVLKKVNSTFHLNIPARELSNKDPKVALQAVMNRWLPLSDAILSMVVKCLPDPVTAQSFRISRLLPKRDIVDTGSDVNVLTEANTVKKSIEACDSRPEAPLVAFVSKMFAVPVKMLPRGGNHVETTNYSAEDGGDGESDECFLAFARVFSGVIHSGQRVFVLSALYDPTKGESMQKHIQEAQLSSLYLMMGQGLTPVNSVKAGNLVAIRGLSQHILKSATLSSTRNSWPFSSMAFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSSRGEHVLAAAGEVHLERCIKDLKERFARISLEVSPPLVSYKETIEGEPSNVLDYFKVLSESAECVIKKTPNGRCVVRVQVLKLPPALTKVLDENSDVLGDIIGVKSGQSHKNLDTKRTSLMEIENPVETVKKRILDAVCSNISSNDEYDGGQVDKHKVSWSKLLRRIWALGPQQIGPNILITPDIRVEDSACSVPIRGSSHVSETLGFVDDSLNGDLDAETSLAHDVSSVSAIEGTQTLYTEAESLESSVLSGFQLATAAGPLCDEPMWGLAFIVEACISSLSGNFDEPETPLQSEHSAIFSGQVMTVVKDACRAAVLQKKPRLVEAMYFCELNTSTEYLGPMYAVLSRRRARIIKEEMQEGSSLFTVHAYLPVSESFGFADELRRWTSGGASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEDKVVQHATKQRTLSRKV 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41982835 41985948 - evm.model.ptg000008l.1012 HCH8g0523 549621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0523 1037 CDD EF2_snRNP_III 536 607 - -
HCH8g0523 1037 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 897 IPR020568 -
HCH8g0523 1037 Pfam Elongation factor G C-terminus 895 979 IPR000640 -
HCH8g0523 1037 FunFam Elongation factor like GTPase 1 224 333 - -
HCH8g0523 1037 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
HCH8g0523 1037 Gene3D - 631 892 IPR014721 -
HCH8g0523 1037 Pfam Elongation factor G domain 2 440 520 IPR053905 -
HCH8g0523 1037 FunFam Elongation factor 2-like protein 1 212 - -
HCH8g0523 1037 Gene3D - 894 1029 - -
HCH8g0523 1037 NCBIfam small GTP-binding protein domain 9 138 IPR005225 GO:0005525(InterPro)
HCH8g0523 1037 CDD EF2 10 232 - -
HCH8g0523 1037 CDD aeEF2_snRNP_like_IV 607 902 - -
HCH8g0523 1037 Gene3D - 2 216 IPR027417 -
HCH8g0523 1037 SUPERFAMILY EF-G C-terminal domain-like 534 608 IPR035647 -
HCH8g0523 1037 SMART EFG_C_a 895 984 IPR000640 -
HCH8g0523 1037 FunFam Translation elongation factor 2 535 611 - -
HCH8g0523 1037 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH8g0523 1037 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH8g0523 1037 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH8g0523 1037 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH8g0523 1037 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH8g0523 1037 SUPERFAMILY Translation proteins 388 530 IPR009000 -
HCH8g0523 1037 SUPERFAMILY EF-G C-terminal domain-like 898 996 IPR035647 -
HCH8g0523 1037 Gene3D Elongation Factor G (Translational Gtpase), domain 3 536 611 - -
HCH8g0523 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
HCH8g0523 1037 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH8g0523 1037 Gene3D Translation factors 350 533 - -
HCH8g0523 1037 CDD EF2_II 397 521 - -
HCH8g0523 1037 Pfam Elongation factor Tu GTP binding domain 8 227 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH8g0523 1037 CDD eEF2_snRNP_like_C 898 976 - -
HCH8g0523 1037 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 1034 - GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
HCH8g0523 1037 FunFam Elongation factor like GTPase 1 894 1029 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0919 HCH-Chr2:52619004 HCH8g0523 HCH-Chr8:41982835 3.00E-120 dispersed
HCH2g0924 HCH-Chr2:52650119 HCH8g0523 HCH-Chr8:41982835 1.70E-120 dispersed
HCH5g0402 HCH-Chr5:2653827 HCH8g0523 HCH-Chr8:41982835 1.10E-20 dispersed
HCH7g0264 HCH-Chr7:1833378 HCH8g0523 HCH-Chr8:41982835 1.30E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0523 K14536 - csv:101220903 1778.45