Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0569 | ATGGGAAGAGAAGTTCAAAAGCAGCCACAGCAGGAGATCGCGTCGGCGGTGGAGCAGCTGGTGGCCGTTAATCCGTACAATCCTGACATTCTTCCCGATCTCGAAAACTACGTAAACGAGCAGGTCTCTTCAGAAACTTACAGTTTAGACGCTAATCTTTGCCTTCTTCGCCTCTATCAGTTTGATCCCGAGAGAATGAGTACTCAAATAGTGGCTCGCATCTTGGTTAAGGCTCTGATGGCAATGCCAGCTCCGGATTTCAGCCTTTGTCTCTTTTTAATTCCAGAAAGAGTGCAAATGGAGGATCAATTCAAGACTTTAATTATACTTTCCCATTATTTGGAGACGGGGAAGTTCCGTCAATTCTGGGATGAAGCTGCTAAGAATCGTCATATAGTTGAGGCTGTGCCAGGTTTTGAACAAGCAATACGAGCTTATGCAGTTCATGTGCTTTCTTTGACTTATCAGAAGGTTCCTAGATCAGTGCTTGCCGAGGCCATCAATATTGAGGGGCTATCTTTGGACAAATTTCTTGAGCATCAAGTTGCAAGCTCTGGTTGGTTTCTTGAGAAAGGTCAGGGGAAGGGCCAACTTATTGTTATTCCGCCCAATGAATTCAATCATCCTGAATTGAAGAAGAAATCCGCAGACAGCATTCCCTTGGAACATATAACTCGCATCTTTCCGATTCTTGGCTAA | 699 | 44.49 | MGREVQKQPQQEIASAVEQLVAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFDPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKNRHIVEAVPGFEQAIRAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVASSGWFLEKGQGKGQLIVIPPNEFNHPELKKKSADSIPLEHITRIFPILG | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42499376 | 42503850 | - | evm.model.ptg000008l.966 | HCH8g0569 | 549667 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0569 | 232 | ProSiteProfiles | PCI domain profile. | 47 | 206 | IPR000717 | - | |
| HCH8g0569 | 232 | SUPERFAMILY | Winged helix DNA-binding domain | 137 | 229 | IPR036390 | - | |
| HCH8g0569 | 232 | FunFam | Eukaryotic translation initiation factor 3 subunit K | 8 | 125 | - | - | |
| HCH8g0569 | 232 | Pfam | CSN8/PSMD8/EIF3K family | 67 | 192 | IPR033464 | - | |
| HCH8g0569 | 232 | Gene3D | - | 128 | 230 | IPR036388 | - | |
| HCH8g0569 | 232 | Gene3D | ARM repeat; domain 1 | 5 | 125 | IPR016020 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006446(InterPro)|GO:0043022(InterPro) | |
| HCH8g0569 | 232 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 | 11 | 229 | IPR009374 | GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER) | |
| HCH8g0569 | 232 | FunFam | Eukaryotic translation initiation factor 3 subunit K | 128 | 231 | - | - | |
| HCH8g0569 | 232 | SUPERFAMILY | ARM repeat | 9 | 135 | IPR016024 | - | |
| HCH8g0569 | 232 | Hamap | Eukaryotic translation initiation factor 3 subunit K [EIF3K]. | 8 | 232 | IPR009374 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH8g0569 | K15028 | - | csv:101214255 | 442.195 |