Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0571 ATGTCTCTCCGGCGAGGTCTTTCTCCAACTCTTATGGCGGCAGCGATGACGATATTTGCAGTTTTGCAGCTGACGATTCCCGCCGTCGTTTTATCTTATACAAATATGATCCCGGCGGAGTCGTCAAAACTTAACAAATGGATTATTCAAAACATGAGAGAATTCCACGAGCGGAAGAATAACGTCGGGGTAAAGGCCTTGGATCCACGCCTCGCCAAGGCGGAGGACACCGTTAAAATCGTGACGGTTAGAAAAGACGGTCGTGGAAATTTCTCCACCATCACCGATGCCATTAACAGCATTCCTTCTGGCAATTCGCGGCGGATCGTGGTGTTGATCGGCCCCGGAGTTTACAGGGAGAAGATAACGATCGATAGGTCAAAACCTTTCGTGACGTTGTATGGGCAAGATGGTAATATGCCGACCATTACATACGACGGCACGGCGGCGAAATACGGAACATTGTACAGCGCGACGGTGGCCGTGGAATCAGATTACTTCGTCGCCGTCAATATTGCTTTTGTGAATTCATCTCCTATGCCGGATGGGAGAGAGACGGGAGCTCAGGCGGTGGCGATGAGGATATCGGGGGATAAGGCTGCGTTCCACCGCTGCCATTTCATAGGGTTTCAGGACACATTATGCGACGACAGAGGCAGACATTTCTTCAATGGTTGTTACATTCAAGGCACTGTTGATTTCATTTTTGGAAATGGAAAATCCATCTACTTGAAAACTAAAATAGAGTCAGTGGCGAAAGGGGTGGGAGTGATAACGGCTCAAGCGAGGGAAGATGCATCAGACGACAGCGGGTTTGCATTTGCGTATTGCAATATAACGGGAACTGGAGATACATATTTGGGAAGAGCATGGAAAGAGAGGCCTCGTGTGGTCTTTGCTTACACATATATGGGAACCCTCATTAACTCCGAAGGATGGTCCAATAACATGCACGGCGAGCGCGAAAAGCCTGGAGTGTATTATGGAGAGTACAAGTGCATGGGGCCAGGGGCAACTTCGTCTGGAAGAGTGAAATCTTCGAGGATACTAACTGATGAAGAAGCAAAGGCTTTCTTGAGTATCACTTATATCCAAGGAAGCAAATGGCTTCTTTCTCCCCCAAGTATCTCTTATATCCGTTCCCATTTCCATTAA 1155 47.88 MSLRRGLSPTLMAAAMTIFAVLQLTIPAVVLSYTNMIPAESSKLNKWIIQNMREFHERKNNVGVKALDPRLAKAEDTVKIVTVRKDGRGNFSTITDAINSIPSGNSRRIVVLIGPGVYREKITIDRSKPFVTLYGQDGNMPTITYDGTAAKYGTLYSATVAVESDYFVAVNIAFVNSSPMPDGRETGAQAVAMRISGDKAAFHRCHFIGFQDTLCDDRGRHFFNGCYIQGTVDFIFGNGKSIYLKTKIESVAKGVGVITAQAREDASDDSGFAFAYCNITGTGDTYLGRAWKERPRVVFAYTYMGTLINSEGWSNNMHGEREKPGVYYGEYKCMGPGATSSGRVKSSRILTDEEAKAFLSITYIQGSKWLLSPPSISYIRSHFH 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42526737 42528939 + evm.model.ptg000008l.964 HCH8g0571 549669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0571 384 ProSitePatterns Pectinesterase signature 2. 228 237 IPR033131 -
HCH8g0571 384 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 370 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
HCH8g0571 384 Pfam Pectinesterase 81 366 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH8g0571 384 FunFam Pectinesterase 76 372 - -
HCH8g0571 384 Gene3D - 75 375 IPR012334 -
HCH8g0571 384 SUPERFAMILY Pectin lyase-like 80 370 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0571 HCH-Chr8:42526737 HCH8g0574 HCH-Chr8:42558672 1.40E-170 dispersed
HCH8g0571 HCH-Chr8:42526737 HCH8g0572 HCH-Chr8:42533040 3.10E-186 tandem
HCH6g1323 HCH-Chr6:47351196 HCH8g0571 HCH-Chr8:42526737 7.10E-69 transposed
HCH6g0034 HCH-Chr6:485787 HCH8g0571 HCH-Chr8:42526737 3.00E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0571 K01051 - csv:101214012 554.673