Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0580 | ATGGCAGCAGCTCAGCTCACTGGGTCTTTAATTTCGTCTAGAAATTTGACATCTTTTCATGGGCTTAGACCTTCTGCTGTCAAATTTTCACCTACTGTTGGACATGTGAGAATTGGGGGTTTGGCCAATAGGTCTTATACTGGCTTGGTAGTCAGAGCTGCTACTGTTGTTACTCCTAAGTACACTTCGATCAAGCCTTTGGGTGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAGGAGAAGACTGATGGTGGGATTTTACTTCCAACCACAGCTCAGACAAAGCCTCAAGGAGGGGAGGTTGTTGCAGTAGGAGAAGGCAAGTTGATTGGAAATACCAAAGTGGAAGCTAGTGTGAAGACTGGTGCACAAGTGGTTTACTCTAAGTACGCTGGCACTGAATTGGAGTTCAATGGTTCAAAGCATCTTATTCTTAAGGATGATGATATCGTTGGTATTTTAGAAACAGATGATGCGAAAGATCTTCAGCCCCTGAATGATAGAGTCTTAATCAAGGTGGCTGCAGCTGAAGAAAAAACCGCTGGAGGTTTGTTGCTGACAGAGGCAACCAAGGAAAAACCTTCCATTGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGACGAGGAGGGCAAGAGGAAACCATTATCCATTTCATCGGGAAGTACTGTGCTGTACTCGAAGTATGCAGGGAACGAGTTCAAGGGCAAAGATGGGTCCGATTTCATTGCTTTGAGGGCATCAGATGTCATTGCTGTACTATCCGCCGCCGCCGTCCACCGTACTCTTTCTTCGCCGCCTTCAACTAAACGTTGCCTTTGCATTGTGGAGCTTCCAATTCGCATATCATTGATGGGTTCAGATGAGGAGGTTTTAGAAATTAATAATTTGGAAAGAGGTCTGTTATCAGAAACGGGTTCTTTTTCGGAACATGATGGCGAGGATGACCCCGTTTTGTATTCCGCTTCCTTCGAAGAAATGGAAGAGAATTTTGTCAAGTATCATACTGCACAATGGATGCTTTACTCGTTGCTTTTGATTCTAGCTTGGGGCATTGGGTTGTTTATGCTGATTTATCTACCGGTGAGAAGATATATTCTGCGCAAGGATATTCAATCACGAAAGCTTTATCTTACGCCGAATTCCATAATCTATAAGGTTACAAGGCCCGTGCCTTTTCCATGTTTTGGAGTACTGAAGAAAGAGAAGCATGTTTTGTTGCCTTCAGTTGCTGACATTGTGGTTGAACAAGGATATTTGGAGTCTCTCTTTGGAGTTTACTCACTTAGGATTGAGAATGTTGGCGTGAGAAGGCCACCTAGTGATGATGTTCAAATTCAAGGAATTGTAAATCCAAGTGCCTTTAAGAAGGCTGTTTTAATGCGCCTTTCTAGTTTGAGAAATGAGGTTTACTCTTCTCAAATTTCCACAGTTGAAGAAGTTCCAAATAAAAGGGCATCCCCATCAAAATCTGTGAAGTATGATCCATATTTTTATTCGGGTGAACTAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTAAAGAGAGTTCAAGCTTTGATTGAGGAACAGCGCTCTCAAGTGTCTGACTCTCTAGGTTGA | 1605 | 43.12 | MAAAQLTGSLISSRNLTSFHGLRPSAVKFSPTVGHVRIGGLANRSYTGLVVRAATVVTPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQTKPQGGEVVAVGEGKLIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKDDDIVGILETDDAKDLQPLNDRVLIKVAAAEEKTAGGLLLTEATKEKPSIGTVIAVGPGHLDEEGKRKPLSISSGSTVLYSKYAGNEFKGKDGSDFIALRASDVIAVLSAAAVHRTLSSPPSTKRCLCIVELPIRISLMGSDEEVLEINNLERGLLSETGSFSEHDGEDDPVLYSASFEEMEENFVKYHTAQWMLYSLLLILAWGIGLFMLIYLPVRRYILRKDIQSRKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLPSVADIVVEQGYLESLFGVYSLRIENVGVRRPPSDDVQIQGIVNPSAFKKAVLMRLSSLRNEVYSSQISTVEEVPNKRASPSKSVKYDPYFYSGELVLQKVEEVGSSVKRVQALIEEQRSQVSDSLG | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42630528 | 42642912 | - | evm.model.ptg000008l.955 | HCH8g0580 | 549678 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0580 | 534 | CDD | cpn10 | 63 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | Hamap | Co-chaperonin GroES [groES]. | 161 | 255 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | SMART | Cpn10_2 | 63 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | SMART | Cpn10_2 | 161 | 254 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | Gene3D | GroES chaperonin | 57 | 157 | IPR037124 | GO:0006457(InterPro) | |
| HCH8g0580 | 534 | Gene3D | GroES chaperonin | 158 | 263 | IPR037124 | GO:0006457(InterPro) | |
| HCH8g0580 | 534 | SUPERFAMILY | GroES-like | 62 | 155 | IPR011032 | - | |
| HCH8g0580 | 534 | Hamap | Co-chaperonin GroES [groES]. | 63 | 155 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | PANTHER | EXPRESSED PROTEIN | 284 | 531 | - | - | |
| HCH8g0580 | 534 | CDD | cpn10 | 162 | 254 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | ProSitePatterns | Chaperonins cpn10 signature. | 162 | 186 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
| HCH8g0580 | 534 | PRINTS | 10kDa chaperonin signature | 141 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | PRINTS | 10kDa chaperonin signature | 86 | 107 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | PRINTS | 10kDa chaperonin signature | 120 | 132 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | PRINTS | 10kDa chaperonin signature | 64 | 79 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | SUPERFAMILY | GroES-like | 161 | 254 | IPR011032 | - | |
| HCH8g0580 | 534 | Pfam | Chaperonin 10 Kd subunit | 162 | 253 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | Pfam | Chaperonin 10 Kd subunit | 64 | 153 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| HCH8g0580 | 534 | ProSitePatterns | Chaperonins cpn10 signature. | 64 | 88 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
| HCH8g0580 | 534 | FunFam | 20 kDa chaperonin, chloroplastic | 57 | 156 | - | - | |
| HCH8g0580 | 534 | FunFam | 10 kDa chaperonin | 160 | 256 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1159 | HCH-Chr13:38021660 | HCH8g0580 | HCH-Chr8:42630528 | 2.50E-39 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH8g0580 | K04078 | - | csv:101212396 | 442.965 |