Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0580 ATGGCAGCAGCTCAGCTCACTGGGTCTTTAATTTCGTCTAGAAATTTGACATCTTTTCATGGGCTTAGACCTTCTGCTGTCAAATTTTCACCTACTGTTGGACATGTGAGAATTGGGGGTTTGGCCAATAGGTCTTATACTGGCTTGGTAGTCAGAGCTGCTACTGTTGTTACTCCTAAGTACACTTCGATCAAGCCTTTGGGTGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAGGAGAAGACTGATGGTGGGATTTTACTTCCAACCACAGCTCAGACAAAGCCTCAAGGAGGGGAGGTTGTTGCAGTAGGAGAAGGCAAGTTGATTGGAAATACCAAAGTGGAAGCTAGTGTGAAGACTGGTGCACAAGTGGTTTACTCTAAGTACGCTGGCACTGAATTGGAGTTCAATGGTTCAAAGCATCTTATTCTTAAGGATGATGATATCGTTGGTATTTTAGAAACAGATGATGCGAAAGATCTTCAGCCCCTGAATGATAGAGTCTTAATCAAGGTGGCTGCAGCTGAAGAAAAAACCGCTGGAGGTTTGTTGCTGACAGAGGCAACCAAGGAAAAACCTTCCATTGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGACGAGGAGGGCAAGAGGAAACCATTATCCATTTCATCGGGAAGTACTGTGCTGTACTCGAAGTATGCAGGGAACGAGTTCAAGGGCAAAGATGGGTCCGATTTCATTGCTTTGAGGGCATCAGATGTCATTGCTGTACTATCCGCCGCCGCCGTCCACCGTACTCTTTCTTCGCCGCCTTCAACTAAACGTTGCCTTTGCATTGTGGAGCTTCCAATTCGCATATCATTGATGGGTTCAGATGAGGAGGTTTTAGAAATTAATAATTTGGAAAGAGGTCTGTTATCAGAAACGGGTTCTTTTTCGGAACATGATGGCGAGGATGACCCCGTTTTGTATTCCGCTTCCTTCGAAGAAATGGAAGAGAATTTTGTCAAGTATCATACTGCACAATGGATGCTTTACTCGTTGCTTTTGATTCTAGCTTGGGGCATTGGGTTGTTTATGCTGATTTATCTACCGGTGAGAAGATATATTCTGCGCAAGGATATTCAATCACGAAAGCTTTATCTTACGCCGAATTCCATAATCTATAAGGTTACAAGGCCCGTGCCTTTTCCATGTTTTGGAGTACTGAAGAAAGAGAAGCATGTTTTGTTGCCTTCAGTTGCTGACATTGTGGTTGAACAAGGATATTTGGAGTCTCTCTTTGGAGTTTACTCACTTAGGATTGAGAATGTTGGCGTGAGAAGGCCACCTAGTGATGATGTTCAAATTCAAGGAATTGTAAATCCAAGTGCCTTTAAGAAGGCTGTTTTAATGCGCCTTTCTAGTTTGAGAAATGAGGTTTACTCTTCTCAAATTTCCACAGTTGAAGAAGTTCCAAATAAAAGGGCATCCCCATCAAAATCTGTGAAGTATGATCCATATTTTTATTCGGGTGAACTAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTAAAGAGAGTTCAAGCTTTGATTGAGGAACAGCGCTCTCAAGTGTCTGACTCTCTAGGTTGA 1605 43.12 MAAAQLTGSLISSRNLTSFHGLRPSAVKFSPTVGHVRIGGLANRSYTGLVVRAATVVTPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQTKPQGGEVVAVGEGKLIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKDDDIVGILETDDAKDLQPLNDRVLIKVAAAEEKTAGGLLLTEATKEKPSIGTVIAVGPGHLDEEGKRKPLSISSGSTVLYSKYAGNEFKGKDGSDFIALRASDVIAVLSAAAVHRTLSSPPSTKRCLCIVELPIRISLMGSDEEVLEINNLERGLLSETGSFSEHDGEDDPVLYSASFEEMEENFVKYHTAQWMLYSLLLILAWGIGLFMLIYLPVRRYILRKDIQSRKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLPSVADIVVEQGYLESLFGVYSLRIENVGVRRPPSDDVQIQGIVNPSAFKKAVLMRLSSLRNEVYSSQISTVEEVPNKRASPSKSVKYDPYFYSGELVLQKVEEVGSSVKRVQALIEEQRSQVSDSLG 534
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 42630528 42642912 - evm.model.ptg000008l.955 HCH8g0580 549678
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0580 534 CDD cpn10 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 SMART Cpn10_2 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 SMART Cpn10_2 161 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 Gene3D GroES chaperonin 57 157 IPR037124 GO:0006457(InterPro)
HCH8g0580 534 Gene3D GroES chaperonin 158 263 IPR037124 GO:0006457(InterPro)
HCH8g0580 534 SUPERFAMILY GroES-like 62 155 IPR011032 -
HCH8g0580 534 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 PANTHER EXPRESSED PROTEIN 284 531 - -
HCH8g0580 534 CDD cpn10 162 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
HCH8g0580 534 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 SUPERFAMILY GroES-like 161 254 IPR011032 -
HCH8g0580 534 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
HCH8g0580 534 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
HCH8g0580 534 FunFam 20 kDa chaperonin, chloroplastic 57 156 - -
HCH8g0580 534 FunFam 10 kDa chaperonin 160 256 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1159 HCH-Chr13:38021660 HCH8g0580 HCH-Chr8:42630528 2.50E-39 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0580 K04078 - csv:101212396 442.965